Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_953 and HP15_954 are separated by 112 nucleotides HP15_954 and HP15_955 are separated by 177 nucleotides
HP15_953: HP15_953 - protein containing thiamine pyrophosphate enzyme, C-terminal TPP-binding / Thiamine pyrophosphate enzyme, N-terminal TPP binding region, at 969,711 to 971,369
_953
HP15_954: HP15_954 - peptidoglycan-associated cytoplasmic membrane protein, at 971,482 to 971,727
_954
HP15_955: HP15_955 - short chain fatty acid transporter, at 971,905 to 972,645
_955
Position (kb) 971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 970.496 kb on - strand, within HP15_953 at 970.679 kb on + strand, within HP15_953 at 970.687 kb on - strand, within HP15_953 at 970.709 kb on - strand, within HP15_953 at 970.749 kb on + strand, within HP15_953 at 970.884 kb on + strand, within HP15_953 at 970.887 kb on - strand, within HP15_953 at 970.892 kb on - strand, within HP15_953 at 970.897 kb on - strand, within HP15_953 at 970.897 kb on - strand, within HP15_953 at 970.901 kb on + strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.921 kb on - strand, within HP15_953 at 971.046 kb on + strand, within HP15_953 at 971.093 kb on - strand, within HP15_953 at 971.161 kb on - strand, within HP15_953 at 971.163 kb on - strand, within HP15_953 at 971.185 kb on + strand, within HP15_953 at 971.256 kb on + strand at 971.289 kb on + strand at 971.321 kb on - strand at 971.364 kb on - strand at 971.611 kb on - strand, within HP15_954 at 971.693 kb on - strand, within HP15_954 at 971.800 kb on + strand at 971.812 kb on + strand at 971.877 kb on - strand at 971.914 kb on + strand at 971.922 kb on - strand at 971.922 kb on - strand at 971.942 kb on + strand at 971.955 kb on + strand at 971.980 kb on - strand, within HP15_955 at 971.992 kb on - strand, within HP15_955 at 972.017 kb on + strand, within HP15_955 at 972.025 kb on - strand, within HP15_955 at 972.065 kb on + strand, within HP15_955 at 972.073 kb on - strand, within HP15_955 at 972.207 kb on - strand, within HP15_955 at 972.283 kb on - strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.341 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.501 kb on + strand, within HP15_955 at 972.507 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.571 kb on + strand, within HP15_955 at 972.639 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 970,496 - HP15_953 0.47 +0.1 970,679 + HP15_953 0.58 +0.2 970,687 - HP15_953 0.59 +2.2 970,709 - HP15_953 0.60 -0.9 970,749 + HP15_953 0.63 -0.7 970,884 + HP15_953 0.71 -0.7 970,887 - HP15_953 0.71 +0.5 970,892 - HP15_953 0.71 -0.9 970,897 - HP15_953 0.71 -0.9 970,897 - HP15_953 0.71 -0.7 970,901 + HP15_953 0.72 +0.4 970,916 - HP15_953 0.73 +0.3 970,916 - HP15_953 0.73 +0.6 970,916 - HP15_953 0.73 +1.5 970,916 - HP15_953 0.73 -0.5 970,916 - HP15_953 0.73 -1.6 970,916 - HP15_953 0.73 +0.6 970,921 - HP15_953 0.73 -1.0 971,046 + HP15_953 0.80 +2.2 971,093 - HP15_953 0.83 +1.4 971,161 - HP15_953 0.87 -0.2 971,163 - HP15_953 0.88 +0.8 971,185 + HP15_953 0.89 +0.4 971,256 + +0.9 971,289 + -0.1 971,321 - -0.5 971,364 - -1.1 971,611 - HP15_954 0.52 -0.2 971,693 - HP15_954 0.86 +2.0 971,800 + +0.2 971,812 + +0.6 971,877 - -0.1 971,914 + +1.3 971,922 - +0.5 971,922 - +1.0 971,942 + +0.2 971,955 + +1.2 971,980 - HP15_955 0.10 -0.5 971,992 - HP15_955 0.12 +0.7 972,017 + HP15_955 0.15 +0.8 972,025 - HP15_955 0.16 +0.9 972,065 + HP15_955 0.22 +0.5 972,073 - HP15_955 0.23 -0.8 972,207 - HP15_955 0.41 -1.2 972,283 - HP15_955 0.51 -0.0 972,323 + HP15_955 0.56 -2.1 972,323 + HP15_955 0.56 +0.3 972,341 + HP15_955 0.59 +0.0 972,417 + HP15_955 0.69 +0.1 972,417 + HP15_955 0.69 +0.5 972,501 + HP15_955 0.80 -0.4 972,507 - HP15_955 0.81 -2.9 972,539 - HP15_955 0.86 -1.0 972,539 - HP15_955 0.86 -0.1 972,571 + HP15_955 0.90 -1.0 972,639 - +0.9
Or see this region's nucleotide sequence