Strain Fitness in Marinobacter adhaerens HP15 around HP15_904

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_903 and HP15_904 are separated by 93 nucleotidesHP15_904 and HP15_905 are separated by 103 nucleotides HP15_903: HP15_903 - beta-lactamase domain protein, at 915,013 to 915,867 _903 HP15_904: HP15_904 - conserved hypothetical protein, at 915,961 to 916,389 _904 HP15_905: HP15_905 - protein containing helix-turn-helix, AraC domain, at 916,493 to 917,410 _905 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1at 914.994 kb on - strandat 914.994 kb on - strandat 915.000 kb on + strandat 915.104 kb on + strand, within HP15_903at 915.203 kb on - strand, within HP15_903at 915.248 kb on - strand, within HP15_903at 915.481 kb on + strand, within HP15_903at 915.639 kb on - strand, within HP15_903at 915.664 kb on - strand, within HP15_903at 915.758 kb on + strand, within HP15_903at 915.795 kb on - strandat 915.819 kb on - strandat 915.861 kb on + strandat 915.967 kb on - strandat 915.989 kb on - strandat 915.995 kb on + strandat 916.005 kb on + strand, within HP15_904at 916.005 kb on + strand, within HP15_904at 916.013 kb on - strand, within HP15_904at 916.013 kb on - strand, within HP15_904at 916.018 kb on + strand, within HP15_904at 916.026 kb on - strand, within HP15_904at 916.251 kb on - strand, within HP15_904at 916.282 kb on - strand, within HP15_904at 916.422 kb on + strandat 916.422 kb on + strandat 916.422 kb on + strandat 916.430 kb on - strandat 916.430 kb on - strandat 916.477 kb on + strandat 916.485 kb on - strandat 916.517 kb on + strandat 916.525 kb on - strandat 916.607 kb on + strand, within HP15_905at 916.647 kb on + strand, within HP15_905at 916.669 kb on + strand, within HP15_905at 916.688 kb on - strand, within HP15_905at 916.698 kb on - strand, within HP15_905at 916.849 kb on - strand, within HP15_905at 916.898 kb on + strand, within HP15_905at 917.034 kb on + strand, within HP15_905at 917.044 kb on - strand, within HP15_905at 917.048 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.069 kb on - strand, within HP15_905at 917.097 kb on - strand, within HP15_905at 917.133 kb on + strand, within HP15_905at 917.133 kb on + strand, within HP15_905at 917.136 kb on - strand, within HP15_905at 917.141 kb on - strand, within HP15_905at 917.183 kb on + strand, within HP15_905at 917.239 kb on + strand, within HP15_905at 917.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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914,994 - -0.3
914,994 - -0.8
915,000 + +0.5
915,104 + HP15_903 0.11 +0.2
915,203 - HP15_903 0.22 -0.1
915,248 - HP15_903 0.27 -0.4
915,481 + HP15_903 0.55 -2.1
915,639 - HP15_903 0.73 +0.4
915,664 - HP15_903 0.76 -0.9
915,758 + HP15_903 0.87 -0.0
915,795 - -0.5
915,819 - +0.7
915,861 + -0.7
915,967 - +0.1
915,989 - -1.7
915,995 + -0.6
916,005 + HP15_904 0.10 +1.3
916,005 + HP15_904 0.10 -0.6
916,013 - HP15_904 0.12 +1.6
916,013 - HP15_904 0.12 +0.1
916,018 + HP15_904 0.13 -2.5
916,026 - HP15_904 0.15 -0.6
916,251 - HP15_904 0.68 +1.3
916,282 - HP15_904 0.75 +1.7
916,422 + +0.4
916,422 + -1.6
916,422 + -0.3
916,430 - -0.7
916,430 - +1.6
916,477 + -1.5
916,485 - -0.9
916,517 + +0.2
916,525 - -1.1
916,607 + HP15_905 0.12 +0.4
916,647 + HP15_905 0.17 -1.0
916,669 + HP15_905 0.19 -0.1
916,688 - HP15_905 0.21 -1.3
916,698 - HP15_905 0.22 -1.3
916,849 - HP15_905 0.39 -0.1
916,898 + HP15_905 0.44 +1.6
917,034 + HP15_905 0.59 -0.6
917,044 - HP15_905 0.60 -0.5
917,048 + HP15_905 0.60 -1.1
917,055 + HP15_905 0.61 -0.3
917,055 + HP15_905 0.61 +1.6
917,055 + HP15_905 0.61 -0.8
917,063 - HP15_905 0.62 -0.3
917,063 - HP15_905 0.62 +0.3
917,063 - HP15_905 0.62 +1.1
917,069 - HP15_905 0.63 -0.9
917,097 - HP15_905 0.66 +0.1
917,133 + HP15_905 0.70 -1.5
917,133 + HP15_905 0.70 +1.7
917,136 - HP15_905 0.70 -0.1
917,141 - HP15_905 0.71 -0.7
917,183 + HP15_905 0.75 +0.1
917,239 + HP15_905 0.81 -1.5
917,351 + -0.2

Or see this region's nucleotide sequence