Strain Fitness in Marinobacter adhaerens HP15 around HP15_839

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_837 and HP15_838 are separated by 49 nucleotidesHP15_838 and HP15_839 overlap by 11 nucleotidesHP15_839 and HP15_840 are separated by 68 nucleotides HP15_837: HP15_837 - iron-hydroxamate transporter permease subunit, at 855,096 to 857,066 _837 HP15_838: HP15_838 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 857,116 to 858,051 _838 HP15_839: HP15_839 - iron-hydroxamate transporter ATP-binding subunit, at 858,041 to 858,814 _839 HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685 _840 Position (kb) 858 859Strain fitness (log2 ratio) -2 -1 0 1 2at 857.052 kb on - strandat 857.272 kb on + strand, within HP15_838at 857.279 kb on + strand, within HP15_838at 857.334 kb on - strand, within HP15_838at 857.334 kb on - strand, within HP15_838at 857.384 kb on + strand, within HP15_838at 857.398 kb on - strand, within HP15_838at 857.406 kb on + strand, within HP15_838at 857.414 kb on - strand, within HP15_838at 857.414 kb on - strand, within HP15_838at 857.414 kb on - strand, within HP15_838at 857.617 kb on - strand, within HP15_838at 857.648 kb on - strand, within HP15_838at 857.648 kb on - strand, within HP15_838at 857.669 kb on + strand, within HP15_838at 857.674 kb on + strand, within HP15_838at 857.697 kb on + strand, within HP15_838at 857.697 kb on + strand, within HP15_838at 857.828 kb on - strand, within HP15_838at 857.865 kb on + strand, within HP15_838at 857.908 kb on - strand, within HP15_838at 857.940 kb on + strand, within HP15_838at 857.948 kb on - strand, within HP15_838at 858.208 kb on + strand, within HP15_839at 858.235 kb on + strand, within HP15_839at 858.271 kb on + strand, within HP15_839at 858.279 kb on + strand, within HP15_839at 858.279 kb on - strand, within HP15_839at 858.300 kb on - strand, within HP15_839at 858.317 kb on - strand, within HP15_839at 858.339 kb on - strand, within HP15_839at 858.342 kb on + strand, within HP15_839at 858.403 kb on - strand, within HP15_839at 858.413 kb on - strand, within HP15_839at 858.426 kb on + strand, within HP15_839at 858.471 kb on - strand, within HP15_839at 858.669 kb on + strand, within HP15_839at 858.738 kb on - strandat 858.757 kb on - strandat 858.765 kb on - strandat 858.787 kb on + strandat 858.838 kb on - strandat 858.905 kb on - strandat 858.920 kb on - strandat 858.935 kb on + strandat 859.033 kb on - strandat 859.063 kb on - strandat 859.067 kb on - strand, within HP15_840at 859.077 kb on + strand, within HP15_840at 859.172 kb on - strand, within HP15_840at 859.214 kb on - strand, within HP15_840at 859.234 kb on + strand, within HP15_840at 859.241 kb on + strand, within HP15_840at 859.242 kb on - strand, within HP15_840at 859.242 kb on - strand, within HP15_840at 859.368 kb on - strand, within HP15_840at 859.469 kb on - strand, within HP15_840at 859.562 kb on - strand, within HP15_840at 859.619 kb on - strand, within HP15_840at 859.773 kb on + strand, within HP15_840at 859.781 kb on - strand, within HP15_840at 859.781 kb on - strand, within HP15_840

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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857,052 - -0.5
857,272 + HP15_838 0.17 +0.9
857,279 + HP15_838 0.17 +0.3
857,334 - HP15_838 0.23 -0.0
857,334 - HP15_838 0.23 -1.3
857,384 + HP15_838 0.29 -1.4
857,398 - HP15_838 0.30 +0.5
857,406 + HP15_838 0.31 -1.1
857,414 - HP15_838 0.32 -0.2
857,414 - HP15_838 0.32 -0.8
857,414 - HP15_838 0.32 -0.6
857,617 - HP15_838 0.54 +0.6
857,648 - HP15_838 0.57 -0.0
857,648 - HP15_838 0.57 +0.1
857,669 + HP15_838 0.59 -0.9
857,674 + HP15_838 0.60 +1.1
857,697 + HP15_838 0.62 -0.0
857,697 + HP15_838 0.62 +0.0
857,828 - HP15_838 0.76 +0.9
857,865 + HP15_838 0.80 +0.1
857,908 - HP15_838 0.85 -1.2
857,940 + HP15_838 0.88 +1.5
857,948 - HP15_838 0.89 +0.8
858,208 + HP15_839 0.22 +1.8
858,235 + HP15_839 0.25 -0.1
858,271 + HP15_839 0.30 -0.5
858,279 + HP15_839 0.31 -0.8
858,279 - HP15_839 0.31 -2.3
858,300 - HP15_839 0.33 +0.3
858,317 - HP15_839 0.36 +1.3
858,339 - HP15_839 0.39 +1.1
858,342 + HP15_839 0.39 -0.3
858,403 - HP15_839 0.47 -1.8
858,413 - HP15_839 0.48 +1.7
858,426 + HP15_839 0.50 -2.2
858,471 - HP15_839 0.56 +0.6
858,669 + HP15_839 0.81 +1.0
858,738 - +1.0
858,757 - +1.5
858,765 - +0.2
858,787 + +1.4
858,838 - -0.7
858,905 - -0.2
858,920 - +1.9
858,935 + -0.6
859,033 - +0.9
859,063 - +0.8
859,067 - HP15_840 0.10 +0.3
859,077 + HP15_840 0.11 +0.3
859,172 - HP15_840 0.16 -0.7
859,214 - HP15_840 0.18 +0.9
859,234 + HP15_840 0.19 +0.4
859,241 + HP15_840 0.20 +0.1
859,242 - HP15_840 0.20 -0.4
859,242 - HP15_840 0.20 +0.6
859,368 - HP15_840 0.27 -0.4
859,469 - HP15_840 0.33 -1.4
859,562 - HP15_840 0.38 +0.2
859,619 - HP15_840 0.41 +0.6
859,773 + HP15_840 0.49 -0.4
859,781 - HP15_840 0.50 +0.2
859,781 - HP15_840 0.50 -0.0

Or see this region's nucleotide sequence