Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_795 and HP15_796 are separated by 78 nucleotides HP15_796 and HP15_797 are separated by 201 nucleotides HP15_797 and HP15_798 are separated by 31 nucleotides
HP15_795: HP15_795 - phosphoenolpyruvate carboxylase, at 808,402 to 811,008
_795
HP15_796: HP15_796 - signal transduction protein, at 811,087 to 812,457
_796
HP15_797: HP15_797 - adenylate kinase, at 812,659 to 813,312
_797
HP15_798: HP15_798 - peptidase M22, glycoprotease, at 813,344 to 814,039
_798
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 810.150 kb on - strand, within HP15_795 at 810.322 kb on + strand, within HP15_795 at 810.345 kb on + strand, within HP15_795 at 810.421 kb on - strand, within HP15_795 at 810.528 kb on - strand, within HP15_795 at 810.574 kb on - strand, within HP15_795 at 810.585 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.674 kb on + strand, within HP15_795 at 810.677 kb on - strand, within HP15_795 at 810.677 kb on - strand, within HP15_795 at 810.698 kb on + strand, within HP15_795 at 810.706 kb on - strand, within HP15_795 at 810.848 kb on - strand at 810.858 kb on + strand at 811.211 kb on + strand at 811.211 kb on + strand at 811.219 kb on - strand at 811.219 kb on - strand at 811.384 kb on - strand, within HP15_796 at 811.698 kb on + strand, within HP15_796 at 811.715 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.843 kb on + strand, within HP15_796 at 811.846 kb on - strand, within HP15_796 at 811.868 kb on + strand, within HP15_796 at 811.920 kb on + strand, within HP15_796 at 811.921 kb on + strand, within HP15_796 at 811.929 kb on - strand, within HP15_796 at 811.957 kb on - strand, within HP15_796 at 812.019 kb on + strand, within HP15_796 at 812.102 kb on + strand, within HP15_796 at 812.207 kb on - strand, within HP15_796 at 812.305 kb on - strand, within HP15_796 at 812.340 kb on + strand at 812.436 kb on + strand at 812.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 810,150 - HP15_795 0.67 +0.5 810,322 + HP15_795 0.74 +0.8 810,345 + HP15_795 0.75 +0.2 810,421 - HP15_795 0.77 -0.4 810,528 - HP15_795 0.82 +0.8 810,574 - HP15_795 0.83 -0.6 810,585 + HP15_795 0.84 +0.8 810,669 + HP15_795 0.87 +1.4 810,669 + HP15_795 0.87 -1.4 810,669 + HP15_795 0.87 -0.5 810,669 + HP15_795 0.87 -0.4 810,674 + HP15_795 0.87 +0.3 810,677 - HP15_795 0.87 +0.8 810,677 - HP15_795 0.87 +0.0 810,698 + HP15_795 0.88 +0.2 810,706 - HP15_795 0.88 -1.7 810,848 - +1.6 810,858 + -1.2 811,211 + -0.3 811,211 + +1.2 811,219 - -0.5 811,219 - +0.2 811,384 - HP15_796 0.22 +0.1 811,698 + HP15_796 0.45 -0.5 811,715 - HP15_796 0.46 -0.2 811,816 - HP15_796 0.53 -1.0 811,816 - HP15_796 0.53 -0.5 811,843 + HP15_796 0.55 -0.1 811,846 - HP15_796 0.55 -1.6 811,868 + HP15_796 0.57 -0.3 811,920 + HP15_796 0.61 -0.4 811,921 + HP15_796 0.61 +0.3 811,929 - HP15_796 0.61 -0.5 811,957 - HP15_796 0.63 +1.3 812,019 + HP15_796 0.68 +1.8 812,102 + HP15_796 0.74 -3.5 812,207 - HP15_796 0.82 -1.6 812,305 - HP15_796 0.89 +1.1 812,340 + +0.4 812,436 + +0.4 812,464 + -1.1
Or see this region's nucleotide sequence