Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_737 and HP15_738 overlap by 4 nucleotides HP15_738 and HP15_739 are separated by 178 nucleotides HP15_739 and HP15_740 are separated by 114 nucleotides
HP15_737: HP15_737 - DNA polymerase IV, at 745,395 to 746,459
_737
HP15_738: HP15_738 - phosphoesterase, PA-phosphatase, at 746,456 to 746,791
_738
HP15_739: HP15_739 - glycosyl transferase, group 1 family protein, at 746,970 to 748,190
_739
HP15_740: HP15_740 - oxidoreductase Tas, aldo/keto reductase family protein, at 748,305 to 749,342
_740
Position (kb) 746
747
748
749 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 745.986 kb on + strand, within HP15_737 at 745.994 kb on - strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.088 kb on - strand, within HP15_737 at 746.141 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.293 kb on + strand, within HP15_737 at 746.294 kb on - strand, within HP15_737 at 746.404 kb on - strand at 746.461 kb on + strand at 746.471 kb on + strand at 746.497 kb on - strand, within HP15_738 at 746.504 kb on - strand, within HP15_738 at 746.717 kb on + strand, within HP15_738 at 746.774 kb on - strand at 746.795 kb on - strand at 746.797 kb on + strand at 746.907 kb on + strand at 746.912 kb on + strand at 746.976 kb on - strand at 747.097 kb on - strand, within HP15_739 at 747.101 kb on + strand, within HP15_739 at 747.168 kb on - strand, within HP15_739 at 747.170 kb on + strand, within HP15_739 at 747.182 kb on + strand, within HP15_739 at 747.204 kb on + strand, within HP15_739 at 747.238 kb on - strand, within HP15_739 at 747.558 kb on - strand, within HP15_739 at 747.595 kb on - strand, within HP15_739 at 747.611 kb on - strand, within HP15_739 at 747.913 kb on + strand, within HP15_739 at 747.931 kb on - strand, within HP15_739 at 748.009 kb on - strand, within HP15_739 at 748.029 kb on + strand, within HP15_739 at 748.051 kb on - strand, within HP15_739 at 748.051 kb on - strand, within HP15_739 at 748.099 kb on - strand at 748.201 kb on - strand at 748.214 kb on - strand at 748.339 kb on + strand at 748.385 kb on - strand at 748.385 kb on - strand at 748.399 kb on + strand at 748.420 kb on - strand, within HP15_740 at 748.439 kb on - strand, within HP15_740 at 748.465 kb on - strand, within HP15_740 at 748.465 kb on - strand, within HP15_740 at 748.465 kb on - strand, within HP15_740 at 748.486 kb on + strand, within HP15_740 at 748.497 kb on + strand, within HP15_740 at 748.661 kb on + strand, within HP15_740 at 748.666 kb on + strand, within HP15_740 at 748.699 kb on + strand, within HP15_740 at 748.980 kb on - strand, within HP15_740 at 749.073 kb on - strand, within HP15_740 at 749.121 kb on + strand, within HP15_740
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 745,986 + HP15_737 0.55 +0.2 745,994 - HP15_737 0.56 +1.2 746,051 + HP15_737 0.62 +0.8 746,051 + HP15_737 0.62 +0.5 746,088 - HP15_737 0.65 +0.9 746,141 - HP15_737 0.70 +0.6 746,189 - HP15_737 0.75 +2.1 746,189 - HP15_737 0.75 -0.7 746,293 + HP15_737 0.84 -0.2 746,294 - HP15_737 0.84 +5.0 746,404 - -0.6 746,461 + +1.0 746,471 + -1.4 746,497 - HP15_738 0.12 +1.1 746,504 - HP15_738 0.14 -1.0 746,717 + HP15_738 0.78 -0.3 746,774 - -0.1 746,795 - -1.6 746,797 + -1.1 746,907 + -0.2 746,912 + +0.2 746,976 - -0.6 747,097 - HP15_739 0.10 -0.6 747,101 + HP15_739 0.11 -1.1 747,168 - HP15_739 0.16 +1.2 747,170 + HP15_739 0.16 -0.2 747,182 + HP15_739 0.17 +0.6 747,204 + HP15_739 0.19 -0.2 747,238 - HP15_739 0.22 +1.9 747,558 - HP15_739 0.48 +1.6 747,595 - HP15_739 0.51 +1.8 747,611 - HP15_739 0.52 +1.0 747,913 + HP15_739 0.77 +1.1 747,931 - HP15_739 0.79 +0.2 748,009 - HP15_739 0.85 +0.9 748,029 + HP15_739 0.87 +2.0 748,051 - HP15_739 0.89 +0.2 748,051 - HP15_739 0.89 -1.4 748,099 - -1.6 748,201 - -2.5 748,214 - -0.5 748,339 + -0.8 748,385 - +1.6 748,385 - -0.5 748,399 + +1.1 748,420 - HP15_740 0.11 +0.0 748,439 - HP15_740 0.13 +0.9 748,465 - HP15_740 0.15 -1.3 748,465 - HP15_740 0.15 +0.3 748,465 - HP15_740 0.15 -1.8 748,486 + HP15_740 0.17 -0.6 748,497 + HP15_740 0.18 +0.5 748,661 + HP15_740 0.34 -0.4 748,666 + HP15_740 0.35 +0.7 748,699 + HP15_740 0.38 -1.3 748,980 - HP15_740 0.65 -1.1 749,073 - HP15_740 0.74 -0.8 749,121 + HP15_740 0.79 +1.1
Or see this region's nucleotide sequence