Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g157 and HP15_p187g158 are separated by 231 nucleotides HP15_p187g158 and HP15_p187g159 are separated by 168 nucleotides
HP15_p187g157: HP15_p187g157 - fatty acid desaturase, at 158,215 to 159,114
_p187g157
HP15_p187g158: HP15_p187g158 - alpha/beta hydrolase fold protein, at 159,346 to 160,383
_p187g158
HP15_p187g159: HP15_p187g159 - kelch domain protein, at 160,552 to 162,888
_p187g159
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 158.365 kb on + strand, within HP15_p187g157 at 158.391 kb on - strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.406 kb on - strand, within HP15_p187g157 at 158.411 kb on - strand, within HP15_p187g157 at 158.420 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.452 kb on - strand, within HP15_p187g157 at 158.468 kb on + strand, within HP15_p187g157 at 158.485 kb on - strand, within HP15_p187g157 at 158.486 kb on - strand, within HP15_p187g157 at 158.507 kb on - strand, within HP15_p187g157 at 158.509 kb on + strand, within HP15_p187g157 at 158.517 kb on - strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.571 kb on - strand, within HP15_p187g157 at 158.644 kb on + strand, within HP15_p187g157 at 158.723 kb on - strand, within HP15_p187g157 at 158.835 kb on + strand, within HP15_p187g157 at 158.841 kb on - strand, within HP15_p187g157 at 158.911 kb on - strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.990 kb on - strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.029 kb on - strand at 159.029 kb on - strand at 159.030 kb on - strand at 159.049 kb on + strand at 159.049 kb on + strand at 159.057 kb on - strand at 159.091 kb on + strand at 159.120 kb on + strand at 159.125 kb on + strand at 159.126 kb on + strand at 159.153 kb on + strand at 159.161 kb on - strand at 159.161 kb on - strand at 159.162 kb on + strand at 159.163 kb on + strand at 159.170 kb on - strand at 159.179 kb on - strand at 159.181 kb on + strand at 159.189 kb on - strand at 159.201 kb on - strand at 159.210 kb on - strand at 159.224 kb on - strand at 159.226 kb on + strand at 159.266 kb on + strand at 159.268 kb on + strand at 159.274 kb on - strand at 159.274 kb on - strand at 159.276 kb on - strand at 159.284 kb on - strand at 159.286 kb on + strand at 159.435 kb on + strand at 159.438 kb on + strand at 159.438 kb on + strand at 159.441 kb on - strand at 159.441 kb on - strand at 159.443 kb on + strand at 159.451 kb on - strand, within HP15_p187g158 at 159.487 kb on - strand, within HP15_p187g158 at 159.501 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.509 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.530 kb on + strand, within HP15_p187g158 at 159.538 kb on - strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.677 kb on - strand, within HP15_p187g158 at 159.730 kb on + strand, within HP15_p187g158 at 159.730 kb on - strand, within HP15_p187g158 at 159.748 kb on - strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.814 kb on + strand, within HP15_p187g158 at 159.832 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.909 kb on - strand, within HP15_p187g158 at 159.914 kb on - strand, within HP15_p187g158 at 159.944 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.012 kb on + strand, within HP15_p187g158 at 160.066 kb on + strand, within HP15_p187g158 at 160.067 kb on - strand, within HP15_p187g158 at 160.114 kb on + strand, within HP15_p187g158 at 160.122 kb on - strand, within HP15_p187g158 at 160.128 kb on + strand, within HP15_p187g158 at 160.146 kb on - strand, within HP15_p187g158 at 160.158 kb on + strand, within HP15_p187g158 at 160.187 kb on - strand, within HP15_p187g158 at 160.198 kb on + strand, within HP15_p187g158 at 160.198 kb on + strand, within HP15_p187g158 at 160.206 kb on - strand, within HP15_p187g158 at 160.208 kb on + strand, within HP15_p187g158 at 160.231 kb on + strand, within HP15_p187g158 at 160.233 kb on + strand, within HP15_p187g158 at 160.234 kb on - strand, within HP15_p187g158 at 160.236 kb on + strand, within HP15_p187g158 at 160.239 kb on - strand, within HP15_p187g158 at 160.239 kb on - strand, within HP15_p187g158 at 160.300 kb on + strand at 160.306 kb on + strand at 160.308 kb on - strand at 160.308 kb on - strand at 160.320 kb on + strand at 160.328 kb on - strand at 160.355 kb on + strand at 160.363 kb on - strand at 160.380 kb on - strand at 160.400 kb on + strand at 160.589 kb on + strand at 160.594 kb on + strand at 160.594 kb on + strand at 160.602 kb on - strand at 160.602 kb on - strand at 160.665 kb on + strand at 160.712 kb on - strand at 160.783 kb on + strand at 160.851 kb on - strand, within HP15_p187g159 at 160.860 kb on + strand, within HP15_p187g159 at 160.860 kb on + strand, within HP15_p187g159 at 160.896 kb on - strand, within HP15_p187g159 at 160.940 kb on + strand, within HP15_p187g159 at 160.958 kb on - strand, within HP15_p187g159 at 160.958 kb on - strand, within HP15_p187g159 at 160.963 kb on - strand, within HP15_p187g159 at 160.971 kb on - strand, within HP15_p187g159 at 160.994 kb on + strand, within HP15_p187g159 at 160.994 kb on + strand, within HP15_p187g159 at 161.002 kb on - strand, within HP15_p187g159 at 161.077 kb on + strand, within HP15_p187g159 at 161.090 kb on - strand, within HP15_p187g159 at 161.092 kb on + strand, within HP15_p187g159 at 161.092 kb on - strand, within HP15_p187g159 at 161.094 kb on + strand, within HP15_p187g159 at 161.107 kb on + strand, within HP15_p187g159 at 161.107 kb on + strand, within HP15_p187g159 at 161.128 kb on + strand, within HP15_p187g159 at 161.128 kb on + strand, within HP15_p187g159 at 161.172 kb on + strand, within HP15_p187g159 at 161.230 kb on + strand, within HP15_p187g159 at 161.377 kb on - strand, within HP15_p187g159
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 158,365 + HP15_p187g157 0.17 +0.2 158,391 - HP15_p187g157 0.20 -0.1 158,398 + HP15_p187g157 0.20 -0.0 158,398 + HP15_p187g157 0.20 -2.3 158,406 - HP15_p187g157 0.21 -0.6 158,411 - HP15_p187g157 0.22 +1.1 158,420 - HP15_p187g157 0.23 +0.3 158,435 - HP15_p187g157 0.24 -0.3 158,435 - HP15_p187g157 0.24 -0.0 158,452 - HP15_p187g157 0.26 +0.3 158,468 + HP15_p187g157 0.28 -0.7 158,485 - HP15_p187g157 0.30 +1.2 158,486 - HP15_p187g157 0.30 +0.0 158,507 - HP15_p187g157 0.32 +1.6 158,509 + HP15_p187g157 0.33 -2.2 158,517 - HP15_p187g157 0.34 -0.2 158,521 + HP15_p187g157 0.34 +1.8 158,521 + HP15_p187g157 0.34 -1.5 158,523 + HP15_p187g157 0.34 -0.0 158,523 + HP15_p187g157 0.34 -0.2 158,531 - HP15_p187g157 0.35 +0.1 158,531 - HP15_p187g157 0.35 +1.0 158,531 - HP15_p187g157 0.35 +0.6 158,571 - HP15_p187g157 0.40 +0.4 158,644 + HP15_p187g157 0.48 -0.7 158,723 - HP15_p187g157 0.56 -0.4 158,835 + HP15_p187g157 0.69 +0.7 158,841 - HP15_p187g157 0.70 +2.2 158,911 - HP15_p187g157 0.77 +1.3 158,946 + HP15_p187g157 0.81 +0.9 158,946 + HP15_p187g157 0.81 +1.4 158,946 + HP15_p187g157 0.81 +0.1 158,946 + HP15_p187g157 0.81 +0.6 158,946 + HP15_p187g157 0.81 +1.1 158,951 + HP15_p187g157 0.82 +1.0 158,951 + HP15_p187g157 0.82 +1.2 158,951 + HP15_p187g157 0.82 -0.8 158,954 - HP15_p187g157 0.82 +1.4 158,954 - HP15_p187g157 0.82 +1.3 158,959 - HP15_p187g157 0.83 +1.8 158,959 - HP15_p187g157 0.83 -0.5 158,990 - HP15_p187g157 0.86 -1.0 159,021 + HP15_p187g157 0.90 -0.3 159,021 + HP15_p187g157 0.90 +1.3 159,029 - +2.0 159,029 - +1.0 159,030 - -0.5 159,049 + +0.7 159,049 + +0.0 159,057 - +0.4 159,091 + +1.1 159,120 + -1.4 159,125 + -1.1 159,126 + +0.3 159,153 + +1.5 159,161 - -0.3 159,161 - -0.2 159,162 + +0.3 159,163 + +1.0 159,170 - +0.1 159,179 - -0.2 159,181 + -0.1 159,189 - -0.1 159,201 - -1.1 159,210 - -0.7 159,224 - -0.1 159,226 + +0.9 159,266 + +1.0 159,268 + +0.1 159,274 - -0.2 159,274 - -0.1 159,276 - -1.7 159,284 - +0.9 159,286 + -0.4 159,435 + +0.6 159,438 + -0.1 159,438 + -1.0 159,441 - -0.7 159,441 - +1.3 159,443 + -0.2 159,451 - HP15_p187g158 0.10 +1.7 159,487 - HP15_p187g158 0.14 +1.7 159,501 + HP15_p187g158 0.15 -0.1 159,507 + HP15_p187g158 0.16 +1.8 159,507 + HP15_p187g158 0.16 +0.1 159,507 + HP15_p187g158 0.16 -1.0 159,507 + HP15_p187g158 0.16 -0.1 159,507 + HP15_p187g158 0.16 +1.8 159,507 + HP15_p187g158 0.16 +1.2 159,509 - HP15_p187g158 0.16 -1.1 159,515 - HP15_p187g158 0.16 +0.0 159,515 - HP15_p187g158 0.16 +1.6 159,515 - HP15_p187g158 0.16 +1.3 159,530 + HP15_p187g158 0.18 +0.9 159,538 - HP15_p187g158 0.18 -0.3 159,670 + HP15_p187g158 0.31 +2.1 159,670 + HP15_p187g158 0.31 +0.1 159,677 - HP15_p187g158 0.32 +0.5 159,730 + HP15_p187g158 0.37 +1.0 159,730 - HP15_p187g158 0.37 +0.2 159,748 - HP15_p187g158 0.39 +0.3 159,812 + HP15_p187g158 0.45 -1.1 159,812 + HP15_p187g158 0.45 +1.0 159,812 + HP15_p187g158 0.45 +3.5 159,814 + HP15_p187g158 0.45 +0.0 159,832 + HP15_p187g158 0.47 +1.0 159,906 + HP15_p187g158 0.54 -1.0 159,906 + HP15_p187g158 0.54 -0.4 159,909 - HP15_p187g158 0.54 -0.5 159,914 - HP15_p187g158 0.55 +1.4 159,944 + HP15_p187g158 0.58 -0.5 159,996 + HP15_p187g158 0.63 +0.9 159,996 + HP15_p187g158 0.63 -0.8 160,004 - HP15_p187g158 0.63 -1.0 160,004 - HP15_p187g158 0.63 +0.5 160,004 - HP15_p187g158 0.63 -0.3 160,012 + HP15_p187g158 0.64 +0.6 160,066 + HP15_p187g158 0.69 -0.2 160,067 - HP15_p187g158 0.69 -0.9 160,114 + HP15_p187g158 0.74 +1.1 160,122 - HP15_p187g158 0.75 +1.0 160,128 + HP15_p187g158 0.75 +2.0 160,146 - HP15_p187g158 0.77 -1.8 160,158 + HP15_p187g158 0.78 +0.0 160,187 - HP15_p187g158 0.81 -1.6 160,198 + HP15_p187g158 0.82 +1.9 160,198 + HP15_p187g158 0.82 -0.3 160,206 - HP15_p187g158 0.83 +1.0 160,208 + HP15_p187g158 0.83 +0.4 160,231 + HP15_p187g158 0.85 +0.0 160,233 + HP15_p187g158 0.85 +0.3 160,234 - HP15_p187g158 0.86 -0.8 160,236 + HP15_p187g158 0.86 +0.2 160,239 - HP15_p187g158 0.86 -0.6 160,239 - HP15_p187g158 0.86 +0.2 160,300 + -0.3 160,306 + +0.8 160,308 - +0.1 160,308 - -0.1 160,320 + +1.1 160,328 - -0.3 160,355 + -0.5 160,363 - +0.3 160,380 - +0.2 160,400 + +0.2 160,589 + +1.0 160,594 + +0.3 160,594 + +0.6 160,602 - +0.3 160,602 - +0.4 160,665 + +1.0 160,712 - +2.0 160,783 + -1.1 160,851 - HP15_p187g159 0.13 +0.7 160,860 + HP15_p187g159 0.13 +0.9 160,860 + HP15_p187g159 0.13 -0.3 160,896 - HP15_p187g159 0.15 +0.5 160,940 + HP15_p187g159 0.17 -0.4 160,958 - HP15_p187g159 0.17 -0.8 160,958 - HP15_p187g159 0.17 -1.1 160,963 - HP15_p187g159 0.18 -1.4 160,971 - HP15_p187g159 0.18 +0.4 160,994 + HP15_p187g159 0.19 -1.0 160,994 + HP15_p187g159 0.19 -2.7 161,002 - HP15_p187g159 0.19 -0.7 161,077 + HP15_p187g159 0.22 -0.0 161,090 - HP15_p187g159 0.23 +1.1 161,092 + HP15_p187g159 0.23 -0.4 161,092 - HP15_p187g159 0.23 -0.6 161,094 + HP15_p187g159 0.23 +0.6 161,107 + HP15_p187g159 0.24 -0.7 161,107 + HP15_p187g159 0.24 +0.4 161,128 + HP15_p187g159 0.25 -1.2 161,128 + HP15_p187g159 0.25 -0.8 161,172 + HP15_p187g159 0.27 +2.8 161,230 + HP15_p187g159 0.29 -1.4 161,377 - HP15_p187g159 0.35 +0.1
Or see this region's nucleotide sequence