Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g141 and HP15_p187g142 are separated by 72 nucleotides HP15_p187g142 and HP15_p187g143 are separated by 44 nucleotides HP15_p187g143 and HP15_p187g145 are separated by 321 nucleotides HP15_p187g145 and HP15_p187g144 overlap by 9 nucleotides
HP15_p187g141: HP15_p187g141 - conjugative transfer protein, at 142,895 to 144,159
_p187g141
HP15_p187g142: HP15_p187g142 - hypothetical protein, at 144,232 to 144,375
_p187g142
HP15_p187g143: HP15_p187g143 - hypothetical protein, at 144,420 to 144,659
_p187g143
HP15_p187g145: HP15_p187g145 - transcriptional regulator MvaT, P16 subunit, at 144,981 to 145,346
_p187g145
HP15_p187g144: HP15_p187g144 - hypothetical protein, at 145,338 to 145,523
_p187g144
Position (kb) 144
145 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 143.457 kb on + strand, within HP15_p187g141 at 143.472 kb on + strand, within HP15_p187g141 at 143.497 kb on + strand, within HP15_p187g141 at 143.499 kb on + strand, within HP15_p187g141 at 143.505 kb on - strand, within HP15_p187g141 at 143.505 kb on - strand, within HP15_p187g141 at 143.507 kb on - strand, within HP15_p187g141 at 143.577 kb on - strand, within HP15_p187g141 at 143.579 kb on + strand, within HP15_p187g141 at 143.596 kb on + strand, within HP15_p187g141 at 143.596 kb on + strand, within HP15_p187g141 at 143.597 kb on - strand, within HP15_p187g141 at 143.604 kb on + strand, within HP15_p187g141 at 143.604 kb on + strand, within HP15_p187g141 at 143.604 kb on + strand, within HP15_p187g141 at 143.604 kb on - strand, within HP15_p187g141 at 143.612 kb on - strand, within HP15_p187g141 at 143.612 kb on - strand, within HP15_p187g141 at 143.612 kb on - strand at 143.612 kb on - strand, within HP15_p187g141 at 143.614 kb on - strand, within HP15_p187g141 at 143.616 kb on + strand, within HP15_p187g141 at 143.616 kb on + strand, within HP15_p187g141 at 143.624 kb on + strand, within HP15_p187g141 at 143.626 kb on + strand, within HP15_p187g141 at 143.681 kb on + strand, within HP15_p187g141 at 143.681 kb on + strand, within HP15_p187g141 at 143.681 kb on + strand, within HP15_p187g141 at 143.681 kb on + strand, within HP15_p187g141 at 143.681 kb on + strand, within HP15_p187g141 at 143.689 kb on - strand, within HP15_p187g141 at 143.689 kb on - strand, within HP15_p187g141 at 143.689 kb on - strand, within HP15_p187g141 at 143.695 kb on - strand, within HP15_p187g141 at 143.702 kb on - strand, within HP15_p187g141 at 143.770 kb on + strand, within HP15_p187g141 at 143.772 kb on + strand, within HP15_p187g141 at 143.772 kb on + strand, within HP15_p187g141 at 143.772 kb on + strand, within HP15_p187g141 at 143.778 kb on - strand, within HP15_p187g141 at 143.780 kb on - strand, within HP15_p187g141 at 143.780 kb on - strand, within HP15_p187g141 at 143.780 kb on - strand, within HP15_p187g141 at 143.780 kb on - strand, within HP15_p187g141 at 143.800 kb on - strand, within HP15_p187g141 at 143.884 kb on + strand, within HP15_p187g141 at 143.888 kb on + strand, within HP15_p187g141 at 143.939 kb on + strand at 143.939 kb on + strand, within HP15_p187g141 at 143.947 kb on - strand, within HP15_p187g141 at 143.947 kb on - strand, within HP15_p187g141 at 143.977 kb on + strand, within HP15_p187g141 at 143.980 kb on - strand, within HP15_p187g141 at 144.051 kb on + strand at 144.059 kb on - strand at 144.068 kb on + strand at 144.084 kb on - strand at 144.091 kb on - strand at 144.103 kb on + strand at 144.103 kb on + strand at 144.103 kb on + strand at 144.103 kb on + strand at 144.103 kb on + strand at 144.103 kb on + strand at 144.111 kb on - strand at 144.111 kb on - strand at 144.111 kb on - strand at 144.133 kb on + strand at 144.134 kb on + strand at 144.134 kb on + strand at 144.134 kb on + strand at 144.142 kb on - strand at 144.192 kb on + strand at 144.203 kb on - strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.213 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.229 kb on + strand at 144.229 kb on + strand at 144.237 kb on - strand at 144.239 kb on + strand at 144.264 kb on - strand, within HP15_p187g142 at 144.269 kb on - strand, within HP15_p187g142 at 144.305 kb on + strand, within HP15_p187g142 at 144.315 kb on - strand, within HP15_p187g142 at 144.315 kb on - strand, within HP15_p187g142 at 144.363 kb on - strand at 144.402 kb on - strand at 144.418 kb on + strand at 144.423 kb on + strand at 144.439 kb on + strand at 144.447 kb on - strand, within HP15_p187g143 at 144.464 kb on + strand, within HP15_p187g143 at 144.472 kb on - strand, within HP15_p187g143 at 144.501 kb on + strand, within HP15_p187g143 at 144.501 kb on + strand, within HP15_p187g143 at 144.514 kb on + strand, within HP15_p187g143 at 144.516 kb on - strand, within HP15_p187g143 at 144.642 kb on + strand at 144.656 kb on + strand at 144.661 kb on - strand at 144.725 kb on + strand at 144.732 kb on + strand at 144.733 kb on - strand at 144.740 kb on - strand at 144.740 kb on - strand at 144.743 kb on + strand at 144.743 kb on + strand at 144.743 kb on + strand at 144.743 kb on + strand at 144.743 kb on + strand at 144.743 kb on + strand at 144.751 kb on - strand at 144.751 kb on - strand at 144.751 kb on - strand at 144.751 kb on - strand at 144.751 kb on - strand at 144.751 kb on - strand at 144.827 kb on + strand at 144.873 kb on + strand at 144.892 kb on + strand at 144.955 kb on - strand at 145.003 kb on - strand at 145.124 kb on - strand, within HP15_p187g145 at 145.124 kb on - strand, within HP15_p187g145 at 145.195 kb on + strand, within HP15_p187g145 at 145.195 kb on + strand, within HP15_p187g145 at 145.198 kb on - strand, within HP15_p187g145 at 145.203 kb on - strand, within HP15_p187g145 at 145.203 kb on - strand, within HP15_p187g145 at 145.213 kb on - strand, within HP15_p187g145 at 145.213 kb on - strand, within HP15_p187g145 at 145.213 kb on - strand, within HP15_p187g145 at 145.213 kb on - strand, within HP15_p187g145 at 145.213 kb on - strand, within HP15_p187g145 at 145.253 kb on - strand, within HP15_p187g145 at 145.310 kb on - strand at 145.335 kb on + strand at 145.343 kb on - strand at 145.343 kb on - strand at 145.350 kb on + strand at 145.369 kb on + strand, within HP15_p187g144 at 145.417 kb on + strand, within HP15_p187g144 at 145.419 kb on + strand, within HP15_p187g144 at 145.419 kb on + strand, within HP15_p187g144 at 145.432 kb on - strand, within HP15_p187g144 at 145.516 kb on + strand at 145.528 kb on - strand at 145.550 kb on - strand at 145.590 kb on - strand at 145.590 kb on - strand at 145.625 kb on + strand at 145.630 kb on + strand at 145.630 kb on + strand at 145.633 kb on - strand at 145.638 kb on - strand at 145.643 kb on - strand at 145.644 kb on + strand at 145.644 kb on + strand at 145.644 kb on + strand at 145.644 kb on + strand at 145.644 kb on + strand at 145.652 kb on - strand at 145.652 kb on - strand at 145.652 kb on - strand at 145.652 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 143,457 + HP15_p187g141 0.44 +1.7 143,472 + HP15_p187g141 0.46 -1.8 143,497 + HP15_p187g141 0.48 -1.4 143,499 + HP15_p187g141 0.48 +1.6 143,505 - HP15_p187g141 0.48 +0.5 143,505 - HP15_p187g141 0.48 +0.4 143,507 - HP15_p187g141 0.48 +0.5 143,577 - HP15_p187g141 0.54 +1.6 143,579 + HP15_p187g141 0.54 -0.8 143,596 + HP15_p187g141 0.55 +0.4 143,596 + HP15_p187g141 0.55 -0.4 143,597 - HP15_p187g141 0.55 +0.4 143,604 + HP15_p187g141 0.56 +1.8 143,604 + HP15_p187g141 0.56 -0.1 143,604 + HP15_p187g141 0.56 +0.0 143,604 - HP15_p187g141 0.56 -0.3 143,612 - HP15_p187g141 0.57 +0.1 143,612 - HP15_p187g141 0.57 +0.5 143,612 - -2.4 143,612 - HP15_p187g141 0.57 -1.6 143,614 - HP15_p187g141 0.57 -1.6 143,616 + HP15_p187g141 0.57 +0.4 143,616 + HP15_p187g141 0.57 -0.3 143,624 + HP15_p187g141 0.58 -1.5 143,626 + HP15_p187g141 0.58 +0.7 143,681 + HP15_p187g141 0.62 -1.1 143,681 + HP15_p187g141 0.62 -0.2 143,681 + HP15_p187g141 0.62 -1.0 143,681 + HP15_p187g141 0.62 +0.8 143,681 + HP15_p187g141 0.62 -0.5 143,689 - HP15_p187g141 0.63 -0.7 143,689 - HP15_p187g141 0.63 -0.4 143,689 - HP15_p187g141 0.63 -0.3 143,695 - HP15_p187g141 0.63 +0.0 143,702 - HP15_p187g141 0.64 -0.1 143,770 + HP15_p187g141 0.69 -0.3 143,772 + HP15_p187g141 0.69 -0.2 143,772 + HP15_p187g141 0.69 +1.4 143,772 + HP15_p187g141 0.69 +0.5 143,778 - HP15_p187g141 0.70 -1.7 143,780 - HP15_p187g141 0.70 -0.3 143,780 - HP15_p187g141 0.70 -1.9 143,780 - HP15_p187g141 0.70 +0.5 143,780 - HP15_p187g141 0.70 -0.4 143,800 - HP15_p187g141 0.72 +0.2 143,884 + HP15_p187g141 0.78 +0.4 143,888 + HP15_p187g141 0.78 -0.1 143,939 + +1.9 143,939 + HP15_p187g141 0.83 +0.6 143,947 - HP15_p187g141 0.83 -1.6 143,947 - HP15_p187g141 0.83 -0.6 143,977 + HP15_p187g141 0.86 -1.3 143,980 - HP15_p187g141 0.86 +0.4 144,051 + -0.4 144,059 - +2.4 144,068 + +1.9 144,084 - +0.2 144,091 - +0.6 144,103 + -2.3 144,103 + +0.0 144,103 + +2.4 144,103 + -0.8 144,103 + +1.5 144,103 + -0.7 144,111 - -0.9 144,111 - -0.5 144,111 - +0.3 144,133 + +0.2 144,134 + -0.6 144,134 + +0.1 144,134 + +1.3 144,142 - -0.7 144,192 + +0.5 144,203 - +0.1 144,212 + -0.1 144,212 + -1.1 144,212 + -0.6 144,212 + -0.3 144,212 + -1.0 144,213 - -1.0 144,220 - +1.1 144,220 - -0.6 144,220 - -0.8 144,220 - +0.4 144,229 + +0.1 144,229 + -1.4 144,237 - -1.5 144,239 + -1.3 144,264 - HP15_p187g142 0.22 -0.2 144,269 - HP15_p187g142 0.26 -0.1 144,305 + HP15_p187g142 0.51 -1.7 144,315 - HP15_p187g142 0.58 -0.1 144,315 - HP15_p187g142 0.58 +0.5 144,363 - +0.4 144,402 - -0.2 144,418 + +1.0 144,423 + -0.9 144,439 + +0.6 144,447 - HP15_p187g143 0.11 +0.4 144,464 + HP15_p187g143 0.18 -0.7 144,472 - HP15_p187g143 0.22 -0.8 144,501 + HP15_p187g143 0.34 -1.1 144,501 + HP15_p187g143 0.34 +0.2 144,514 + HP15_p187g143 0.39 -0.8 144,516 - HP15_p187g143 0.40 +0.4 144,642 + +1.3 144,656 + -1.1 144,661 - -0.2 144,725 + +0.5 144,732 + -0.4 144,733 - -0.3 144,740 - +0.1 144,740 - -0.2 144,743 + -0.7 144,743 + -0.8 144,743 + +1.2 144,743 + -0.5 144,743 + -1.9 144,743 + +0.1 144,751 - -0.4 144,751 - +0.9 144,751 - -0.9 144,751 - +1.2 144,751 - +0.8 144,751 - +0.2 144,827 + +0.9 144,873 + +1.2 144,892 + +1.2 144,955 - -0.2 145,003 - +0.8 145,124 - HP15_p187g145 0.39 +1.1 145,124 - HP15_p187g145 0.39 +1.5 145,195 + HP15_p187g145 0.58 +0.3 145,195 + HP15_p187g145 0.58 +0.4 145,198 - HP15_p187g145 0.59 +0.4 145,203 - HP15_p187g145 0.61 +0.4 145,203 - HP15_p187g145 0.61 +1.0 145,213 - HP15_p187g145 0.63 +0.5 145,213 - HP15_p187g145 0.63 +1.1 145,213 - HP15_p187g145 0.63 -0.9 145,213 - HP15_p187g145 0.63 +0.5 145,213 - HP15_p187g145 0.63 -1.0 145,253 - HP15_p187g145 0.74 -2.4 145,310 - +3.4 145,335 + -0.1 145,343 - +0.1 145,343 - -2.3 145,350 + +0.7 145,369 + HP15_p187g144 0.17 +0.6 145,417 + HP15_p187g144 0.42 +0.2 145,419 + HP15_p187g144 0.44 -0.8 145,419 + HP15_p187g144 0.44 -0.7 145,432 - HP15_p187g144 0.51 -0.6 145,516 + -1.9 145,528 - +0.3 145,550 - +1.4 145,590 - -0.1 145,590 - -0.7 145,625 + -2.0 145,630 + +0.9 145,630 + +0.5 145,633 - +0.5 145,638 - -1.2 145,643 - +2.0 145,644 + -0.1 145,644 + -2.1 145,644 + -0.3 145,644 + -0.7 145,644 + -0.6 145,652 - +0.5 145,652 - +0.7 145,652 - +0.4 145,652 - -0.7
Or see this region's nucleotide sequence