Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g87 and HP15_p187g88 are separated by 86 nucleotides HP15_p187g88 and HP15_p187g89 are separated by 129 nucleotides HP15_p187g89 and HP15_p187g90 are separated by 23 nucleotides HP15_p187g90 and HP15_p187g91 are separated by 4 nucleotides
HP15_p187g87: HP15_p187g87 - signal transduction histidine kinase, at 84,154 to 85,413
_p187g87
HP15_p187g88: HP15_p187g88 - hypothetical protein, at 85,500 to 86,042
_p187g88
HP15_p187g89: HP15_p187g89 - hypothetical protein, at 86,172 to 86,300
_p187g89
HP15_p187g90: HP15_p187g90 - response regulator receiver modulated CheW protein, at 86,324 to 87,256
_p187g90
HP15_p187g91: HP15_p187g91 - protein containing chemotaxis methyl-accepting receptor, signaling, PAS fold protein, at 87,261 to 88,886
_p187g91
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 85.328 kb on + strand at 85.336 kb on - strand at 85.336 kb on - strand at 85.339 kb on + strand at 85.383 kb on + strand at 85.417 kb on - strand at 85.447 kb on + strand at 85.465 kb on - strand at 85.484 kb on - strand at 85.608 kb on + strand, within HP15_p187g88 at 85.618 kb on - strand, within HP15_p187g88 at 85.618 kb on - strand, within HP15_p187g88 at 85.642 kb on - strand, within HP15_p187g88 at 85.649 kb on + strand, within HP15_p187g88 at 85.649 kb on + strand, within HP15_p187g88 at 85.657 kb on - strand, within HP15_p187g88 at 85.657 kb on - strand, within HP15_p187g88 at 85.657 kb on - strand, within HP15_p187g88 at 85.669 kb on + strand, within HP15_p187g88 at 85.674 kb on + strand, within HP15_p187g88 at 85.674 kb on + strand, within HP15_p187g88 at 85.677 kb on - strand, within HP15_p187g88 at 85.684 kb on + strand, within HP15_p187g88 at 85.687 kb on - strand, within HP15_p187g88 at 85.701 kb on + strand, within HP15_p187g88 at 85.706 kb on + strand, within HP15_p187g88 at 85.731 kb on + strand, within HP15_p187g88 at 85.774 kb on + strand, within HP15_p187g88 at 85.791 kb on - strand, within HP15_p187g88 at 85.793 kb on - strand, within HP15_p187g88 at 85.803 kb on - strand, within HP15_p187g88 at 85.860 kb on + strand, within HP15_p187g88 at 85.874 kb on - strand, within HP15_p187g88 at 85.896 kb on - strand, within HP15_p187g88 at 85.896 kb on - strand, within HP15_p187g88 at 85.965 kb on + strand, within HP15_p187g88 at 86.063 kb on + strand at 86.077 kb on - strand at 86.106 kb on - strand at 86.111 kb on - strand at 86.195 kb on - strand, within HP15_p187g89 at 86.215 kb on - strand, within HP15_p187g89 at 86.243 kb on - strand, within HP15_p187g89 at 86.253 kb on - strand, within HP15_p187g89 at 86.308 kb on + strand at 86.387 kb on - strand at 86.387 kb on - strand at 86.387 kb on - strand at 86.387 kb on - strand at 86.438 kb on - strand, within HP15_p187g90 at 86.443 kb on - strand, within HP15_p187g90 at 86.472 kb on + strand, within HP15_p187g90 at 86.475 kb on - strand, within HP15_p187g90 at 86.482 kb on + strand, within HP15_p187g90 at 86.482 kb on + strand, within HP15_p187g90 at 86.490 kb on - strand, within HP15_p187g90 at 86.491 kb on + strand, within HP15_p187g90 at 86.499 kb on - strand, within HP15_p187g90 at 86.512 kb on + strand, within HP15_p187g90 at 86.519 kb on - strand, within HP15_p187g90 at 86.547 kb on + strand, within HP15_p187g90 at 86.582 kb on + strand, within HP15_p187g90 at 86.590 kb on - strand, within HP15_p187g90 at 86.599 kb on - strand, within HP15_p187g90 at 86.662 kb on + strand, within HP15_p187g90 at 86.689 kb on + strand, within HP15_p187g90 at 86.694 kb on + strand, within HP15_p187g90 at 86.702 kb on - strand, within HP15_p187g90 at 86.702 kb on - strand, within HP15_p187g90 at 86.761 kb on + strand, within HP15_p187g90 at 86.776 kb on - strand, within HP15_p187g90 at 86.787 kb on + strand, within HP15_p187g90 at 86.833 kb on + strand, within HP15_p187g90 at 86.951 kb on + strand, within HP15_p187g90 at 86.951 kb on + strand, within HP15_p187g90 at 86.959 kb on - strand, within HP15_p187g90 at 86.959 kb on - strand, within HP15_p187g90 at 87.051 kb on + strand, within HP15_p187g90 at 87.057 kb on - strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.122 kb on + strand, within HP15_p187g90 at 87.155 kb on + strand, within HP15_p187g90 at 87.174 kb on - strand at 87.229 kb on + strand at 87.237 kb on - strand at 87.237 kb on - strand at 87.269 kb on + strand at 87.279 kb on + strand at 87.286 kb on + strand at 87.286 kb on + strand at 87.447 kb on - strand, within HP15_p187g91 at 87.447 kb on - strand, within HP15_p187g91 at 87.447 kb on - strand, within HP15_p187g91 at 87.447 kb on - strand, within HP15_p187g91 at 87.470 kb on - strand, within HP15_p187g91 at 87.536 kb on - strand, within HP15_p187g91 at 87.558 kb on + strand, within HP15_p187g91 at 87.558 kb on + strand, within HP15_p187g91 at 87.566 kb on - strand, within HP15_p187g91 at 87.568 kb on - strand, within HP15_p187g91 at 87.568 kb on - strand, within HP15_p187g91 at 87.574 kb on + strand, within HP15_p187g91 at 87.649 kb on - strand, within HP15_p187g91 at 87.649 kb on - strand, within HP15_p187g91 at 87.661 kb on - strand, within HP15_p187g91 at 87.661 kb on - strand, within HP15_p187g91 at 87.717 kb on + strand, within HP15_p187g91 at 87.725 kb on - strand, within HP15_p187g91 at 87.775 kb on + strand, within HP15_p187g91 at 87.788 kb on - strand, within HP15_p187g91 at 87.803 kb on - strand, within HP15_p187g91 at 87.823 kb on - strand, within HP15_p187g91 at 87.841 kb on - strand, within HP15_p187g91 at 87.860 kb on - strand, within HP15_p187g91 at 87.942 kb on - strand, within HP15_p187g91 at 87.942 kb on - strand, within HP15_p187g91 at 87.959 kb on + strand, within HP15_p187g91 at 88.035 kb on + strand, within HP15_p187g91 at 88.035 kb on + strand, within HP15_p187g91 at 88.041 kb on - strand, within HP15_p187g91 at 88.043 kb on - strand, within HP15_p187g91 at 88.083 kb on + strand, within HP15_p187g91 at 88.083 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.110 kb on + strand, within HP15_p187g91 at 88.118 kb on - strand, within HP15_p187g91 at 88.178 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.230 kb on - strand, within HP15_p187g91 at 88.250 kb on - strand, within HP15_p187g91 at 88.255 kb on + strand, within HP15_p187g91
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 85,328 + +0.1 85,336 - -0.7 85,336 - -0.2 85,339 + +0.3 85,383 + +0.0 85,417 - +1.4 85,447 + +1.2 85,465 - +0.5 85,484 - +1.5 85,608 + HP15_p187g88 0.20 -1.0 85,618 - HP15_p187g88 0.22 +0.6 85,618 - HP15_p187g88 0.22 +0.3 85,642 - HP15_p187g88 0.26 -1.0 85,649 + HP15_p187g88 0.27 +0.4 85,649 + HP15_p187g88 0.27 +1.0 85,657 - HP15_p187g88 0.29 +0.0 85,657 - HP15_p187g88 0.29 -1.5 85,657 - HP15_p187g88 0.29 -0.7 85,669 + HP15_p187g88 0.31 +0.9 85,674 + HP15_p187g88 0.32 +0.2 85,674 + HP15_p187g88 0.32 +1.2 85,677 - HP15_p187g88 0.33 +0.1 85,684 + HP15_p187g88 0.34 +1.5 85,687 - HP15_p187g88 0.34 +0.4 85,701 + HP15_p187g88 0.37 +0.5 85,706 + HP15_p187g88 0.38 +0.8 85,731 + HP15_p187g88 0.43 -1.5 85,774 + HP15_p187g88 0.50 +0.2 85,791 - HP15_p187g88 0.54 +0.0 85,793 - HP15_p187g88 0.54 -0.1 85,803 - HP15_p187g88 0.56 -1.3 85,860 + HP15_p187g88 0.66 +1.1 85,874 - HP15_p187g88 0.69 +0.3 85,896 - HP15_p187g88 0.73 -1.5 85,896 - HP15_p187g88 0.73 +0.1 85,965 + HP15_p187g88 0.86 +0.2 86,063 + -0.2 86,077 - +0.0 86,106 - +1.4 86,111 - +1.1 86,195 - HP15_p187g89 0.18 +1.1 86,215 - HP15_p187g89 0.33 +0.1 86,243 - HP15_p187g89 0.55 -1.2 86,253 - HP15_p187g89 0.63 -1.7 86,308 + +0.4 86,387 - -0.0 86,387 - -0.2 86,387 - -0.2 86,387 - -0.4 86,438 - HP15_p187g90 0.12 +0.4 86,443 - HP15_p187g90 0.13 -2.5 86,472 + HP15_p187g90 0.16 -0.4 86,475 - HP15_p187g90 0.16 +0.1 86,482 + HP15_p187g90 0.17 -0.9 86,482 + HP15_p187g90 0.17 +0.7 86,490 - HP15_p187g90 0.18 -0.0 86,491 + HP15_p187g90 0.18 -0.1 86,499 - HP15_p187g90 0.19 -1.5 86,512 + HP15_p187g90 0.20 -0.3 86,519 - HP15_p187g90 0.21 -0.1 86,547 + HP15_p187g90 0.24 +1.0 86,582 + HP15_p187g90 0.28 -1.3 86,590 - HP15_p187g90 0.29 +0.5 86,599 - HP15_p187g90 0.29 +2.0 86,662 + HP15_p187g90 0.36 -1.7 86,689 + HP15_p187g90 0.39 +2.3 86,694 + HP15_p187g90 0.40 -0.5 86,702 - HP15_p187g90 0.41 -0.7 86,702 - HP15_p187g90 0.41 -0.1 86,761 + HP15_p187g90 0.47 +0.4 86,776 - HP15_p187g90 0.48 -0.5 86,787 + HP15_p187g90 0.50 +0.1 86,833 + HP15_p187g90 0.55 +1.2 86,951 + HP15_p187g90 0.67 +0.3 86,951 + HP15_p187g90 0.67 -1.6 86,959 - HP15_p187g90 0.68 +0.2 86,959 - HP15_p187g90 0.68 +0.3 87,051 + HP15_p187g90 0.78 -2.2 87,057 - HP15_p187g90 0.79 +0.9 87,112 + HP15_p187g90 0.84 -0.5 87,112 + HP15_p187g90 0.84 +1.9 87,112 + HP15_p187g90 0.84 +1.2 87,112 + HP15_p187g90 0.84 -1.3 87,122 + HP15_p187g90 0.86 -0.2 87,155 + HP15_p187g90 0.89 +1.9 87,174 - +0.3 87,229 + +0.9 87,237 - +2.0 87,237 - -2.0 87,269 + -0.5 87,279 + -0.1 87,286 + -1.0 87,286 + -0.6 87,447 - HP15_p187g91 0.11 +0.5 87,447 - HP15_p187g91 0.11 +0.3 87,447 - HP15_p187g91 0.11 +2.6 87,447 - HP15_p187g91 0.11 +1.2 87,470 - HP15_p187g91 0.13 +0.1 87,536 - HP15_p187g91 0.17 -1.1 87,558 + HP15_p187g91 0.18 -1.1 87,558 + HP15_p187g91 0.18 -1.5 87,566 - HP15_p187g91 0.19 -1.9 87,568 - HP15_p187g91 0.19 +1.4 87,568 - HP15_p187g91 0.19 +0.2 87,574 + HP15_p187g91 0.19 -1.7 87,649 - HP15_p187g91 0.24 -0.9 87,649 - HP15_p187g91 0.24 -0.3 87,661 - HP15_p187g91 0.25 -0.3 87,661 - HP15_p187g91 0.25 +0.7 87,717 + HP15_p187g91 0.28 +0.5 87,725 - HP15_p187g91 0.29 +1.1 87,775 + HP15_p187g91 0.32 +0.0 87,788 - HP15_p187g91 0.32 +0.7 87,803 - HP15_p187g91 0.33 +1.3 87,823 - HP15_p187g91 0.35 +0.4 87,841 - HP15_p187g91 0.36 +0.8 87,860 - HP15_p187g91 0.37 +0.6 87,942 - HP15_p187g91 0.42 +1.0 87,942 - HP15_p187g91 0.42 +2.3 87,959 + HP15_p187g91 0.43 +1.2 88,035 + HP15_p187g91 0.48 +1.3 88,035 + HP15_p187g91 0.48 -1.7 88,041 - HP15_p187g91 0.48 +0.7 88,043 - HP15_p187g91 0.48 +1.0 88,083 + HP15_p187g91 0.51 -0.9 88,083 + HP15_p187g91 0.51 -1.8 88,088 + HP15_p187g91 0.51 +0.2 88,088 + HP15_p187g91 0.51 +0.3 88,088 + HP15_p187g91 0.51 -0.7 88,088 + HP15_p187g91 0.51 -1.1 88,088 + HP15_p187g91 0.51 +0.9 88,088 + HP15_p187g91 0.51 +1.7 88,096 - HP15_p187g91 0.51 +1.2 88,096 - HP15_p187g91 0.51 +0.4 88,096 - HP15_p187g91 0.51 +3.9 88,096 - HP15_p187g91 0.51 +0.7 88,110 + HP15_p187g91 0.52 +0.3 88,118 - HP15_p187g91 0.53 -0.6 88,178 + HP15_p187g91 0.56 -0.7 88,222 + HP15_p187g91 0.59 +0.3 88,222 + HP15_p187g91 0.59 +0.6 88,222 + HP15_p187g91 0.59 +2.3 88,230 - HP15_p187g91 0.60 +0.4 88,250 - HP15_p187g91 0.61 +1.6 88,255 + HP15_p187g91 0.61 +0.8
Or see this region's nucleotide sequence