Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g4 and HP15_p42g5 are separated by 439 nucleotides HP15_p42g5 and HP15_p42g6 are separated by 121 nucleotides HP15_p42g6 and HP15_p42g7 are separated by 40 nucleotides
HP15_p42g4: HP15_p42g4 - hypothetical protein, at 3,414 to 3,533
_p42g4
HP15_p42g5: HP15_p42g5 - conserved hypothetical protein, at 3,973 to 4,269
_p42g5
HP15_p42g6: HP15_p42g6 - antirestriction protein, at 4,391 to 4,825
_p42g6
HP15_p42g7: HP15_p42g7 - klcB-like protein, at 4,866 to 5,933
_p42g7
Position (kb) 3
4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 2.991 kb on + strand at 2.992 kb on + strand at 3.000 kb on - strand at 3.000 kb on - strand at 3.010 kb on + strand at 3.029 kb on - strand at 3.048 kb on + strand at 3.248 kb on - strand at 3.258 kb on + strand at 3.312 kb on + strand at 3.312 kb on + strand at 3.332 kb on - strand at 3.338 kb on + strand at 3.338 kb on + strand at 3.343 kb on + strand at 3.371 kb on + strand at 3.388 kb on + strand at 3.423 kb on + strand at 3.494 kb on + strand, within HP15_p42g4 at 3.502 kb on - strand, within HP15_p42g4 at 3.527 kb on + strand at 3.535 kb on - strand at 3.560 kb on + strand at 3.631 kb on + strand at 3.631 kb on + strand at 3.636 kb on + strand at 3.640 kb on + strand at 3.641 kb on + strand at 3.649 kb on - strand at 3.656 kb on + strand at 3.664 kb on - strand at 3.666 kb on - strand at 3.725 kb on - strand at 3.736 kb on + strand at 3.753 kb on + strand at 3.753 kb on + strand at 3.758 kb on + strand at 3.786 kb on + strand at 3.796 kb on + strand at 3.811 kb on - strand at 3.834 kb on + strand at 3.842 kb on - strand at 3.843 kb on - strand at 3.926 kb on + strand at 4.058 kb on + strand, within HP15_p42g5 at 4.071 kb on + strand, within HP15_p42g5 at 4.079 kb on - strand, within HP15_p42g5 at 4.082 kb on + strand, within HP15_p42g5 at 4.114 kb on + strand, within HP15_p42g5 at 4.114 kb on + strand, within HP15_p42g5 at 4.122 kb on - strand, within HP15_p42g5 at 4.158 kb on + strand, within HP15_p42g5 at 4.166 kb on + strand, within HP15_p42g5 at 4.368 kb on + strand at 4.439 kb on + strand, within HP15_p42g6 at 4.497 kb on + strand, within HP15_p42g6 at 4.521 kb on - strand, within HP15_p42g6 at 4.540 kb on + strand, within HP15_p42g6 at 4.561 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.571 kb on - strand, within HP15_p42g6 at 4.571 kb on - strand, within HP15_p42g6 at 4.713 kb on - strand, within HP15_p42g6 at 4.718 kb on + strand, within HP15_p42g6 at 4.720 kb on - strand, within HP15_p42g6 at 4.723 kb on + strand, within HP15_p42g6 at 4.723 kb on + strand, within HP15_p42g6 at 4.726 kb on - strand, within HP15_p42g6 at 4.726 kb on - strand, within HP15_p42g6 at 4.772 kb on + strand, within HP15_p42g6 at 4.779 kb on + strand, within HP15_p42g6 at 4.779 kb on + strand, within HP15_p42g6 at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.977 kb on + strand, within HP15_p42g7 at 4.980 kb on - strand, within HP15_p42g7 at 5.245 kb on + strand, within HP15_p42g7
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 2,991 + +0.6 2,992 + -0.2 3,000 - -0.6 3,000 - -0.4 3,010 + +0.2 3,029 - +0.4 3,048 + -0.0 3,248 - -0.5 3,258 + -0.7 3,312 + +0.0 3,312 + +0.1 3,332 - +0.9 3,338 + -0.7 3,338 + -1.0 3,343 + -1.7 3,371 + -0.4 3,388 + -1.4 3,423 + -0.0 3,494 + HP15_p42g4 0.67 -0.1 3,502 - HP15_p42g4 0.73 -1.2 3,527 + +0.9 3,535 - +0.2 3,560 + -0.8 3,631 + +0.4 3,631 + +1.5 3,636 + -0.9 3,640 + +0.3 3,641 + -0.6 3,649 - -0.2 3,656 + +1.7 3,664 - +0.7 3,666 - +0.5 3,725 - -0.6 3,736 + +0.9 3,753 + +0.9 3,753 + -0.9 3,758 + -0.0 3,786 + -2.9 3,796 + -1.3 3,811 - +2.3 3,834 + +1.0 3,842 - -0.3 3,843 - +0.4 3,926 + +0.9 4,058 + HP15_p42g5 0.29 -0.5 4,071 + HP15_p42g5 0.33 -0.4 4,079 - HP15_p42g5 0.36 -0.5 4,082 + HP15_p42g5 0.37 -2.1 4,114 + HP15_p42g5 0.47 -0.7 4,114 + HP15_p42g5 0.47 -2.3 4,122 - HP15_p42g5 0.50 -1.0 4,158 + HP15_p42g5 0.62 +0.3 4,166 + HP15_p42g5 0.65 -1.2 4,368 + +0.8 4,439 + HP15_p42g6 0.11 +0.0 4,497 + HP15_p42g6 0.24 -0.2 4,521 - HP15_p42g6 0.30 +0.3 4,540 + HP15_p42g6 0.34 -0.4 4,561 + HP15_p42g6 0.39 -0.4 4,563 + HP15_p42g6 0.40 +0.7 4,563 + HP15_p42g6 0.40 -1.9 4,563 + HP15_p42g6 0.40 -0.2 4,569 - HP15_p42g6 0.41 -0.1 4,569 - HP15_p42g6 0.41 +0.1 4,569 - HP15_p42g6 0.41 +1.1 4,569 - HP15_p42g6 0.41 +1.0 4,571 - HP15_p42g6 0.41 -0.7 4,571 - HP15_p42g6 0.41 +0.3 4,713 - HP15_p42g6 0.74 -1.3 4,718 + HP15_p42g6 0.75 -0.1 4,720 - HP15_p42g6 0.76 -0.5 4,723 + HP15_p42g6 0.76 -1.2 4,723 + HP15_p42g6 0.76 -0.1 4,726 - HP15_p42g6 0.77 +0.9 4,726 - HP15_p42g6 0.77 -1.7 4,772 + HP15_p42g6 0.88 -1.6 4,779 + HP15_p42g6 0.89 -2.0 4,779 + HP15_p42g6 0.89 -0.7 4,972 + -0.9 4,972 + -1.3 4,972 + -0.6 4,977 + HP15_p42g7 0.10 -4.1 4,980 - HP15_p42g7 0.11 -0.7 5,245 + HP15_p42g7 0.35 -0.5
Or see this region's nucleotide sequence