Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3957 and HP15_3958 are separated by 76 nucleotides HP15_3958 and HP15_3959 are separated by 29 nucleotides HP15_3959 and HP15_3960 are separated by 63 nucleotides HP15_3960 and HP15_3961 are separated by 217 nucleotides
HP15_3957: HP15_3957 - endoribonuclease L-PSP family protein, at 4,188,126 to 4,188,476
_3957
HP15_3958: HP15_3958 - rhodanese domain protein, at 4,188,553 to 4,189,401
_3958
HP15_3959: HP15_3959 - cytochrome B561, at 4,189,431 to 4,189,955
_3959
HP15_3960: HP15_3960 - secreted protein, at 4,190,019 to 4,190,372
_3960
HP15_3961: HP15_3961 - two-component transcriptional regulator, winged helix family, at 4,190,590 to 4,191,315
_3961
Position (kb) 4189
4190 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4188.698 kb on + strand, within HP15_3958 at 4188.781 kb on - strand, within HP15_3958 at 4188.889 kb on - strand, within HP15_3958 at 4188.923 kb on + strand, within HP15_3958 at 4188.944 kb on - strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4189.089 kb on + strand, within HP15_3958 at 4189.101 kb on + strand, within HP15_3958 at 4189.103 kb on + strand, within HP15_3958 at 4189.123 kb on - strand, within HP15_3958 at 4189.128 kb on - strand, within HP15_3958 at 4189.173 kb on + strand, within HP15_3958 at 4189.181 kb on - strand, within HP15_3958 at 4189.181 kb on - strand, within HP15_3958 at 4189.187 kb on + strand, within HP15_3958 at 4189.218 kb on + strand, within HP15_3958 at 4189.218 kb on + strand, within HP15_3958 at 4189.253 kb on - strand, within HP15_3958 at 4189.253 kb on - strand, within HP15_3958 at 4189.336 kb on - strand at 4189.353 kb on - strand at 4189.403 kb on - strand at 4189.428 kb on - strand at 4189.524 kb on + strand, within HP15_3959 at 4189.564 kb on - strand, within HP15_3959 at 4189.564 kb on - strand, within HP15_3959 at 4189.584 kb on + strand, within HP15_3959 at 4189.688 kb on + strand, within HP15_3959 at 4189.701 kb on - strand, within HP15_3959 at 4189.757 kb on - strand, within HP15_3959 at 4189.766 kb on + strand, within HP15_3959 at 4189.790 kb on + strand, within HP15_3959 at 4189.917 kb on - strand at 4189.924 kb on + strand at 4190.022 kb on + strand at 4190.055 kb on - strand, within HP15_3960 at 4190.328 kb on - strand, within HP15_3960 at 4190.398 kb on - strand at 4190.467 kb on + strand at 4190.475 kb on - strand at 4190.487 kb on - strand at 4190.557 kb on + strand at 4190.644 kb on - strand at 4190.751 kb on + strand, within HP15_3961 at 4190.797 kb on - strand, within HP15_3961 at 4190.829 kb on + strand, within HP15_3961 at 4190.911 kb on - strand, within HP15_3961 at 4190.951 kb on + strand, within HP15_3961
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 4,188,698 + HP15_3958 0.17 +0.4 4,188,781 - HP15_3958 0.27 +0.8 4,188,889 - HP15_3958 0.40 +0.0 4,188,923 + HP15_3958 0.44 +1.1 4,188,944 - HP15_3958 0.46 +0.8 4,188,957 + HP15_3958 0.48 +0.3 4,188,957 + HP15_3958 0.48 -0.5 4,188,957 + HP15_3958 0.48 +0.1 4,188,957 + HP15_3958 0.48 +0.3 4,189,089 + HP15_3958 0.63 -1.3 4,189,101 + HP15_3958 0.65 +1.2 4,189,103 + HP15_3958 0.65 -2.8 4,189,123 - HP15_3958 0.67 +1.7 4,189,128 - HP15_3958 0.68 -1.8 4,189,173 + HP15_3958 0.73 -1.0 4,189,181 - HP15_3958 0.74 -0.3 4,189,181 - HP15_3958 0.74 -0.3 4,189,187 + HP15_3958 0.75 +0.2 4,189,218 + HP15_3958 0.78 +0.4 4,189,218 + HP15_3958 0.78 +1.2 4,189,253 - HP15_3958 0.82 -0.6 4,189,253 - HP15_3958 0.82 +0.7 4,189,336 - +1.4 4,189,353 - -1.0 4,189,403 - -0.7 4,189,428 - -0.4 4,189,524 + HP15_3959 0.18 +0.4 4,189,564 - HP15_3959 0.25 +0.6 4,189,564 - HP15_3959 0.25 -2.1 4,189,584 + HP15_3959 0.29 -0.9 4,189,688 + HP15_3959 0.49 -0.2 4,189,701 - HP15_3959 0.51 -0.9 4,189,757 - HP15_3959 0.62 -0.5 4,189,766 + HP15_3959 0.64 +0.3 4,189,790 + HP15_3959 0.68 +1.2 4,189,917 - -0.0 4,189,924 + -0.4 4,190,022 + +1.7 4,190,055 - HP15_3960 0.10 -1.4 4,190,328 - HP15_3960 0.87 -0.3 4,190,398 - -0.4 4,190,467 + -0.2 4,190,475 - -0.5 4,190,487 - +0.0 4,190,557 + -0.8 4,190,644 - +1.3 4,190,751 + HP15_3961 0.22 +0.0 4,190,797 - HP15_3961 0.29 +1.0 4,190,829 + HP15_3961 0.33 +0.4 4,190,911 - HP15_3961 0.44 +1.6 4,190,951 + HP15_3961 0.50 -0.1
Or see this region's nucleotide sequence