Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3545 and HP15_3546 are separated by 6 nucleotides
HP15_3545: HP15_3545 - transcriptional regulator, MerR family, at 3,734,317 to 3,734,760
_3545
HP15_3546: HP15_3546 - copper-translocating P-type ATPase, at 3,734,767 to 3,737,388
_3546
Position (kb)
3734
3735 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3733.421 kb on + strand at 3733.456 kb on - strand at 3733.607 kb on + strand at 3733.610 kb on - strand at 3733.627 kb on + strand at 3733.647 kb on - strand at 3733.733 kb on - strand at 3733.842 kb on - strand at 3733.852 kb on + strand at 3734.010 kb on + strand at 3734.019 kb on + strand at 3734.025 kb on - strand at 3734.118 kb on + strand at 3734.125 kb on - strand at 3734.195 kb on - strand at 3734.207 kb on + strand at 3734.207 kb on + strand at 3734.207 kb on + strand at 3734.215 kb on - strand at 3734.215 kb on - strand at 3734.232 kb on - strand at 3734.261 kb on - strand at 3734.282 kb on + strand at 3734.381 kb on + strand, within HP15_3545 at 3734.391 kb on + strand, within HP15_3545 at 3734.399 kb on - strand, within HP15_3545 at 3734.754 kb on - strand at 3734.849 kb on + strand at 3734.924 kb on + strand at 3734.924 kb on - strand at 3734.953 kb on - strand at 3735.030 kb on + strand, within HP15_3546 at 3735.030 kb on + strand, within HP15_3546 at 3735.038 kb on - strand, within HP15_3546 at 3735.038 kb on - strand, within HP15_3546 at 3735.038 kb on - strand, within HP15_3546 at 3735.055 kb on + strand, within HP15_3546 at 3735.063 kb on - strand, within HP15_3546 at 3735.063 kb on - strand, within HP15_3546 at 3735.103 kb on - strand, within HP15_3546 at 3735.121 kb on - strand, within HP15_3546 at 3735.184 kb on + strand, within HP15_3546 at 3735.209 kb on + strand, within HP15_3546 at 3735.262 kb on + strand, within HP15_3546 at 3735.369 kb on + strand, within HP15_3546 at 3735.369 kb on + strand, within HP15_3546 at 3735.409 kb on - strand, within HP15_3546 at 3735.413 kb on + strand, within HP15_3546 at 3735.467 kb on - strand, within HP15_3546 at 3735.534 kb on + strand, within HP15_3546 at 3735.534 kb on + strand, within HP15_3546 at 3735.542 kb on - strand, within HP15_3546 at 3735.720 kb on + strand, within HP15_3546
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 3,733,421 + -0.4 3,733,456 - +1.0 3,733,607 + -0.0 3,733,610 - +1.5 3,733,627 + -0.3 3,733,647 - -0.4 3,733,733 - -2.1 3,733,842 - +0.2 3,733,852 + -0.5 3,734,010 + +1.3 3,734,019 + -1.5 3,734,025 - -0.5 3,734,118 + +0.5 3,734,125 - +0.1 3,734,195 - -1.1 3,734,207 + -0.4 3,734,207 + -0.0 3,734,207 + -1.3 3,734,215 - -1.1 3,734,215 - -1.8 3,734,232 - -0.8 3,734,261 - +1.1 3,734,282 + -0.5 3,734,381 + HP15_3545 0.14 -0.6 3,734,391 + HP15_3545 0.17 -0.8 3,734,399 - HP15_3545 0.18 -0.6 3,734,754 - +0.3 3,734,849 + +1.4 3,734,924 + +1.1 3,734,924 - -0.2 3,734,953 - -0.4 3,735,030 + HP15_3546 0.10 +0.7 3,735,030 + HP15_3546 0.10 +1.0 3,735,038 - HP15_3546 0.10 -0.1 3,735,038 - HP15_3546 0.10 -0.4 3,735,038 - HP15_3546 0.10 +0.6 3,735,055 + HP15_3546 0.11 +2.6 3,735,063 - HP15_3546 0.11 -1.5 3,735,063 - HP15_3546 0.11 +0.5 3,735,103 - HP15_3546 0.13 +0.3 3,735,121 - HP15_3546 0.14 +0.0 3,735,184 + HP15_3546 0.16 +0.5 3,735,209 + HP15_3546 0.17 +1.8 3,735,262 + HP15_3546 0.19 +0.2 3,735,369 + HP15_3546 0.23 +1.0 3,735,369 + HP15_3546 0.23 +0.3 3,735,409 - HP15_3546 0.24 +2.1 3,735,413 + HP15_3546 0.25 +0.7 3,735,467 - HP15_3546 0.27 -1.3 3,735,534 + HP15_3546 0.29 -0.1 3,735,534 + HP15_3546 0.29 +0.5 3,735,542 - HP15_3546 0.30 +1.1 3,735,720 + HP15_3546 0.36 +0.6
Or see this region's nucleotide sequence