Strain Fitness in Marinobacter adhaerens HP15 around HP15_3545

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3545 and HP15_3546 are separated by 6 nucleotides HP15_3545: HP15_3545 - transcriptional regulator, MerR family, at 3,734,317 to 3,734,760 _3545 HP15_3546: HP15_3546 - copper-translocating P-type ATPase, at 3,734,767 to 3,737,388 _3546 Position (kb) 3734 3735Strain fitness (log2 ratio) -2 -1 0 1 2at 3733.421 kb on + strandat 3733.456 kb on - strandat 3733.607 kb on + strandat 3733.610 kb on - strandat 3733.627 kb on + strandat 3733.647 kb on - strandat 3733.733 kb on - strandat 3733.842 kb on - strandat 3733.852 kb on + strandat 3734.010 kb on + strandat 3734.019 kb on + strandat 3734.025 kb on - strandat 3734.118 kb on + strandat 3734.125 kb on - strandat 3734.195 kb on - strandat 3734.207 kb on + strandat 3734.207 kb on + strandat 3734.207 kb on + strandat 3734.215 kb on - strandat 3734.215 kb on - strandat 3734.232 kb on - strandat 3734.261 kb on - strandat 3734.282 kb on + strandat 3734.381 kb on + strand, within HP15_3545at 3734.391 kb on + strand, within HP15_3545at 3734.399 kb on - strand, within HP15_3545at 3734.754 kb on - strandat 3734.849 kb on + strandat 3734.924 kb on + strandat 3734.924 kb on - strandat 3734.953 kb on - strandat 3735.030 kb on + strand, within HP15_3546at 3735.030 kb on + strand, within HP15_3546at 3735.038 kb on - strand, within HP15_3546at 3735.038 kb on - strand, within HP15_3546at 3735.038 kb on - strand, within HP15_3546at 3735.055 kb on + strand, within HP15_3546at 3735.063 kb on - strand, within HP15_3546at 3735.063 kb on - strand, within HP15_3546at 3735.103 kb on - strand, within HP15_3546at 3735.121 kb on - strand, within HP15_3546at 3735.184 kb on + strand, within HP15_3546at 3735.209 kb on + strand, within HP15_3546at 3735.262 kb on + strand, within HP15_3546at 3735.369 kb on + strand, within HP15_3546at 3735.369 kb on + strand, within HP15_3546at 3735.409 kb on - strand, within HP15_3546at 3735.413 kb on + strand, within HP15_3546at 3735.467 kb on - strand, within HP15_3546at 3735.534 kb on + strand, within HP15_3546at 3735.534 kb on + strand, within HP15_3546at 3735.542 kb on - strand, within HP15_3546at 3735.720 kb on + strand, within HP15_3546

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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3,733,421 + -0.4
3,733,456 - +1.0
3,733,607 + -0.0
3,733,610 - +1.5
3,733,627 + -0.3
3,733,647 - -0.4
3,733,733 - -2.1
3,733,842 - +0.2
3,733,852 + -0.5
3,734,010 + +1.3
3,734,019 + -1.5
3,734,025 - -0.5
3,734,118 + +0.5
3,734,125 - +0.1
3,734,195 - -1.1
3,734,207 + -0.4
3,734,207 + -0.0
3,734,207 + -1.3
3,734,215 - -1.1
3,734,215 - -1.8
3,734,232 - -0.8
3,734,261 - +1.1
3,734,282 + -0.5
3,734,381 + HP15_3545 0.14 -0.6
3,734,391 + HP15_3545 0.17 -0.8
3,734,399 - HP15_3545 0.18 -0.6
3,734,754 - +0.3
3,734,849 + +1.4
3,734,924 + +1.1
3,734,924 - -0.2
3,734,953 - -0.4
3,735,030 + HP15_3546 0.10 +0.7
3,735,030 + HP15_3546 0.10 +1.0
3,735,038 - HP15_3546 0.10 -0.1
3,735,038 - HP15_3546 0.10 -0.4
3,735,038 - HP15_3546 0.10 +0.6
3,735,055 + HP15_3546 0.11 +2.6
3,735,063 - HP15_3546 0.11 -1.5
3,735,063 - HP15_3546 0.11 +0.5
3,735,103 - HP15_3546 0.13 +0.3
3,735,121 - HP15_3546 0.14 +0.0
3,735,184 + HP15_3546 0.16 +0.5
3,735,209 + HP15_3546 0.17 +1.8
3,735,262 + HP15_3546 0.19 +0.2
3,735,369 + HP15_3546 0.23 +1.0
3,735,369 + HP15_3546 0.23 +0.3
3,735,409 - HP15_3546 0.24 +2.1
3,735,413 + HP15_3546 0.25 +0.7
3,735,467 - HP15_3546 0.27 -1.3
3,735,534 + HP15_3546 0.29 -0.1
3,735,534 + HP15_3546 0.29 +0.5
3,735,542 - HP15_3546 0.30 +1.1
3,735,720 + HP15_3546 0.36 +0.6

Or see this region's nucleotide sequence