Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3005 and HP15_3006 are separated by 20 nucleotides HP15_3006 and HP15_3007 are separated by 97 nucleotides
HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832
_3005
HP15_3006: HP15_3006 - peptidase M23B, at 3,150,853 to 3,151,986
_3006
HP15_3007: HP15_3007 - carboxyl-terminal protease family protein, at 3,152,084 to 3,153,490
_3007
Position (kb)
3150
3151
3152 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3150.825 kb on - strand at 3150.853 kb on + strand at 3150.885 kb on + strand at 3150.908 kb on - strand at 3150.928 kb on - strand at 3150.956 kb on + strand at 3151.012 kb on - strand, within HP15_3006 at 3151.113 kb on + strand, within HP15_3006 at 3151.187 kb on - strand, within HP15_3006 at 3151.268 kb on - strand, within HP15_3006 at 3151.271 kb on + strand, within HP15_3006 at 3151.304 kb on + strand, within HP15_3006 at 3151.340 kb on + strand, within HP15_3006 at 3151.380 kb on + strand, within HP15_3006 at 3151.388 kb on - strand, within HP15_3006 at 3151.390 kb on + strand, within HP15_3006 at 3151.572 kb on - strand, within HP15_3006 at 3151.617 kb on + strand, within HP15_3006 at 3151.625 kb on - strand, within HP15_3006 at 3151.646 kb on - strand, within HP15_3006 at 3151.647 kb on - strand, within HP15_3006 at 3151.729 kb on + strand, within HP15_3006 at 3151.772 kb on + strand, within HP15_3006 at 3151.780 kb on - strand, within HP15_3006 at 3151.780 kb on - strand, within HP15_3006 at 3151.929 kb on - strand at 3151.936 kb on - strand at 3151.956 kb on + strand at 3151.969 kb on - strand at 3152.023 kb on + strand at 3152.025 kb on - strand at 3152.092 kb on + strand at 3152.105 kb on + strand at 3152.105 kb on - strand at 3152.175 kb on - strand at 3152.175 kb on - strand at 3152.175 kb on - strand at 3152.187 kb on - strand at 3152.238 kb on + strand, within HP15_3007 at 3152.526 kb on + strand, within HP15_3007 at 3152.613 kb on - strand, within HP15_3007 at 3152.769 kb on + strand, within HP15_3007 at 3152.803 kb on + strand, within HP15_3007 at 3152.811 kb on - strand, within HP15_3007 at 3152.811 kb on - strand, within HP15_3007 at 3152.856 kb on + strand, within HP15_3007 at 3152.903 kb on + strand, within HP15_3007 at 3152.903 kb on + strand, within HP15_3007 at 3152.905 kb on + strand, within HP15_3007 at 3152.916 kb on + strand, within HP15_3007
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 3,150,825 - -0.1 3,150,853 + +0.5 3,150,885 + +1.3 3,150,908 - -0.1 3,150,928 - +1.3 3,150,956 + +0.9 3,151,012 - HP15_3006 0.14 -0.6 3,151,113 + HP15_3006 0.23 -0.7 3,151,187 - HP15_3006 0.29 -0.5 3,151,268 - HP15_3006 0.37 +0.3 3,151,271 + HP15_3006 0.37 +0.0 3,151,304 + HP15_3006 0.40 +0.8 3,151,340 + HP15_3006 0.43 +2.6 3,151,380 + HP15_3006 0.46 -1.1 3,151,388 - HP15_3006 0.47 +0.6 3,151,390 + HP15_3006 0.47 +2.9 3,151,572 - HP15_3006 0.63 +1.0 3,151,617 + HP15_3006 0.67 -0.1 3,151,625 - HP15_3006 0.68 +0.3 3,151,646 - HP15_3006 0.70 +2.0 3,151,647 - HP15_3006 0.70 -1.4 3,151,729 + HP15_3006 0.77 +1.2 3,151,772 + HP15_3006 0.81 +2.0 3,151,780 - HP15_3006 0.82 -0.4 3,151,780 - HP15_3006 0.82 -0.2 3,151,929 - +3.6 3,151,936 - +1.7 3,151,956 + +1.0 3,151,969 - -1.1 3,152,023 + +0.8 3,152,025 - +1.5 3,152,092 + +0.3 3,152,105 + +0.1 3,152,105 - -1.0 3,152,175 - -1.1 3,152,175 - +0.5 3,152,175 - +0.6 3,152,187 - -0.3 3,152,238 + HP15_3007 0.11 +0.2 3,152,526 + HP15_3007 0.31 +0.3 3,152,613 - HP15_3007 0.38 -0.0 3,152,769 + HP15_3007 0.49 +0.2 3,152,803 + HP15_3007 0.51 -0.7 3,152,811 - HP15_3007 0.52 -1.0 3,152,811 - HP15_3007 0.52 +2.3 3,152,856 + HP15_3007 0.55 -1.3 3,152,903 + HP15_3007 0.58 -0.1 3,152,903 + HP15_3007 0.58 -1.0 3,152,905 + HP15_3007 0.58 +0.4 3,152,916 + HP15_3007 0.59 +0.3
Or see this region's nucleotide sequence