Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2750 and HP15_2751 are separated by 9 nucleotides HP15_2751 and HP15_2752 are separated by 52 nucleotides
HP15_2750: HP15_2750 - protein containing carbamoyl phosphate synthetase, large subunit, ATP-binding / carboxyl transferase / carbamoyl phosphate synthase, large subunit, N-terminal / biotin carboxylase, C-terminal / biotin/lipoyl attachment, at 2,901,054 to 2,904,329
_2750
HP15_2751: HP15_2751 - conserved hypothetical protein, secreted, at 2,904,339 to 2,906,039
_2751
HP15_2752: HP15_2752 - glutathione-regulated potassium-efflux system protein kefC, at 2,906,092 to 2,907,975
_2752
Position (kb)
2904
2905
2906
2907 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2903.394 kb on - strand, within HP15_2750 at 2903.424 kb on - strand, within HP15_2750 at 2903.439 kb on - strand, within HP15_2750 at 2903.465 kb on + strand, within HP15_2750 at 2903.551 kb on + strand, within HP15_2750 at 2903.655 kb on + strand, within HP15_2750 at 2903.663 kb on - strand, within HP15_2750 at 2903.668 kb on - strand, within HP15_2750 at 2903.705 kb on - strand, within HP15_2750 at 2903.803 kb on - strand, within HP15_2750 at 2903.855 kb on + strand, within HP15_2750 at 2903.861 kb on - strand, within HP15_2750 at 2903.863 kb on - strand, within HP15_2750 at 2903.964 kb on + strand, within HP15_2750 at 2903.989 kb on - strand, within HP15_2750 at 2903.997 kb on + strand, within HP15_2750 at 2904.010 kb on - strand at 2904.062 kb on + strand at 2904.093 kb on + strand at 2904.183 kb on - strand at 2904.185 kb on + strand at 2904.193 kb on - strand at 2904.193 kb on - strand at 2904.244 kb on + strand at 2904.488 kb on - strand at 2904.495 kb on + strand at 2904.528 kb on + strand, within HP15_2751 at 2904.572 kb on + strand, within HP15_2751 at 2904.613 kb on + strand, within HP15_2751 at 2904.613 kb on + strand, within HP15_2751 at 2904.613 kb on - strand, within HP15_2751 at 2904.636 kb on - strand, within HP15_2751 at 2904.681 kb on + strand, within HP15_2751 at 2904.755 kb on + strand, within HP15_2751 at 2904.891 kb on + strand, within HP15_2751 at 2904.989 kb on - strand, within HP15_2751 at 2905.017 kb on + strand, within HP15_2751 at 2905.076 kb on - strand, within HP15_2751 at 2905.334 kb on - strand, within HP15_2751 at 2905.452 kb on + strand, within HP15_2751 at 2905.551 kb on + strand, within HP15_2751 at 2905.556 kb on + strand, within HP15_2751 at 2905.598 kb on + strand, within HP15_2751 at 2905.604 kb on + strand, within HP15_2751 at 2905.651 kb on + strand, within HP15_2751 at 2905.762 kb on + strand, within HP15_2751 at 2905.770 kb on - strand, within HP15_2751 at 2905.781 kb on + strand, within HP15_2751 at 2905.783 kb on + strand, within HP15_2751 at 2905.795 kb on + strand, within HP15_2751 at 2905.805 kb on + strand, within HP15_2751 at 2905.856 kb on - strand, within HP15_2751 at 2905.922 kb on + strand at 2905.930 kb on - strand at 2906.063 kb on + strand at 2906.142 kb on + strand at 2906.164 kb on + strand at 2906.167 kb on - strand at 2906.196 kb on - strand at 2906.337 kb on + strand, within HP15_2752 at 2906.393 kb on + strand, within HP15_2752 at 2906.448 kb on + strand, within HP15_2752 at 2906.493 kb on - strand, within HP15_2752 at 2906.498 kb on - strand, within HP15_2752 at 2906.498 kb on - strand, within HP15_2752 at 2906.572 kb on + strand, within HP15_2752 at 2906.782 kb on + strand, within HP15_2752 at 2906.895 kb on - strand, within HP15_2752 at 2906.895 kb on - strand, within HP15_2752 at 2906.895 kb on - strand, within HP15_2752 at 2906.895 kb on - strand, within HP15_2752 at 2906.895 kb on - strand, within HP15_2752 at 2906.895 kb on - strand, within HP15_2752 at 2906.895 kb on - strand, within HP15_2752 at 2906.905 kb on - strand, within HP15_2752 at 2906.934 kb on + strand, within HP15_2752 at 2907.027 kb on + strand, within HP15_2752
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 2,903,394 - HP15_2750 0.71 +1.1 2,903,424 - HP15_2750 0.72 +0.0 2,903,439 - HP15_2750 0.73 -0.5 2,903,465 + HP15_2750 0.74 +0.5 2,903,551 + HP15_2750 0.76 +2.0 2,903,655 + HP15_2750 0.79 +1.1 2,903,663 - HP15_2750 0.80 +0.3 2,903,668 - HP15_2750 0.80 -0.4 2,903,705 - HP15_2750 0.81 -0.4 2,903,803 - HP15_2750 0.84 -0.8 2,903,855 + HP15_2750 0.86 +0.6 2,903,861 - HP15_2750 0.86 +0.0 2,903,863 - HP15_2750 0.86 +0.1 2,903,964 + HP15_2750 0.89 -0.7 2,903,989 - HP15_2750 0.90 +1.3 2,903,997 + HP15_2750 0.90 -0.1 2,904,010 - -0.3 2,904,062 + +0.4 2,904,093 + -0.7 2,904,183 - -0.2 2,904,185 + +1.8 2,904,193 - +0.2 2,904,193 - -2.5 2,904,244 + +1.3 2,904,488 - +0.6 2,904,495 + -1.3 2,904,528 + HP15_2751 0.11 +1.1 2,904,572 + HP15_2751 0.14 +1.3 2,904,613 + HP15_2751 0.16 -0.1 2,904,613 + HP15_2751 0.16 -0.9 2,904,613 - HP15_2751 0.16 -0.9 2,904,636 - HP15_2751 0.17 -1.8 2,904,681 + HP15_2751 0.20 -0.6 2,904,755 + HP15_2751 0.24 -1.1 2,904,891 + HP15_2751 0.32 +0.5 2,904,989 - HP15_2751 0.38 -0.6 2,905,017 + HP15_2751 0.40 -2.0 2,905,076 - HP15_2751 0.43 -0.5 2,905,334 - HP15_2751 0.58 -1.0 2,905,452 + HP15_2751 0.65 +0.5 2,905,551 + HP15_2751 0.71 -0.4 2,905,556 + HP15_2751 0.72 +0.8 2,905,598 + HP15_2751 0.74 -0.9 2,905,604 + HP15_2751 0.74 -0.2 2,905,651 + HP15_2751 0.77 -2.6 2,905,762 + HP15_2751 0.84 -0.3 2,905,770 - HP15_2751 0.84 -0.8 2,905,781 + HP15_2751 0.85 -0.4 2,905,783 + HP15_2751 0.85 -0.6 2,905,795 + HP15_2751 0.86 +2.2 2,905,805 + HP15_2751 0.86 +0.1 2,905,856 - HP15_2751 0.89 -2.0 2,905,922 + +0.8 2,905,930 - -0.0 2,906,063 + -1.0 2,906,142 + +0.5 2,906,164 + -1.0 2,906,167 - -0.6 2,906,196 - +0.0 2,906,337 + HP15_2752 0.13 -0.2 2,906,393 + HP15_2752 0.16 +1.4 2,906,448 + HP15_2752 0.19 +0.4 2,906,493 - HP15_2752 0.21 +0.3 2,906,498 - HP15_2752 0.22 -0.6 2,906,498 - HP15_2752 0.22 -1.9 2,906,572 + HP15_2752 0.25 +0.3 2,906,782 + HP15_2752 0.37 -0.1 2,906,895 - HP15_2752 0.43 +1.1 2,906,895 - HP15_2752 0.43 +1.0 2,906,895 - HP15_2752 0.43 +0.3 2,906,895 - HP15_2752 0.43 -0.8 2,906,895 - HP15_2752 0.43 -0.3 2,906,895 - HP15_2752 0.43 +0.4 2,906,895 - HP15_2752 0.43 -0.9 2,906,905 - HP15_2752 0.43 +0.0 2,906,934 + HP15_2752 0.45 +1.9 2,907,027 + HP15_2752 0.50 +0.7
Or see this region's nucleotide sequence