Strain Fitness in Marinobacter adhaerens HP15 around HP15_2751

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2750 and HP15_2751 are separated by 9 nucleotidesHP15_2751 and HP15_2752 are separated by 52 nucleotides HP15_2750: HP15_2750 - protein containing carbamoyl phosphate synthetase, large subunit, ATP-binding / carboxyl transferase / carbamoyl phosphate synthase, large subunit, N-terminal / biotin carboxylase, C-terminal / biotin/lipoyl attachment, at 2,901,054 to 2,904,329 _2750 HP15_2751: HP15_2751 - conserved hypothetical protein, secreted, at 2,904,339 to 2,906,039 _2751 HP15_2752: HP15_2752 - glutathione-regulated potassium-efflux system protein kefC, at 2,906,092 to 2,907,975 _2752 Position (kb) 2904 2905 2906 2907Strain fitness (log2 ratio) -2 -1 0 1 2at 2903.394 kb on - strand, within HP15_2750at 2903.424 kb on - strand, within HP15_2750at 2903.439 kb on - strand, within HP15_2750at 2903.465 kb on + strand, within HP15_2750at 2903.551 kb on + strand, within HP15_2750at 2903.655 kb on + strand, within HP15_2750at 2903.663 kb on - strand, within HP15_2750at 2903.668 kb on - strand, within HP15_2750at 2903.705 kb on - strand, within HP15_2750at 2903.803 kb on - strand, within HP15_2750at 2903.855 kb on + strand, within HP15_2750at 2903.861 kb on - strand, within HP15_2750at 2903.863 kb on - strand, within HP15_2750at 2903.964 kb on + strand, within HP15_2750at 2903.989 kb on - strand, within HP15_2750at 2903.997 kb on + strand, within HP15_2750at 2904.010 kb on - strandat 2904.062 kb on + strandat 2904.093 kb on + strandat 2904.183 kb on - strandat 2904.185 kb on + strandat 2904.193 kb on - strandat 2904.193 kb on - strandat 2904.244 kb on + strandat 2904.488 kb on - strandat 2904.495 kb on + strandat 2904.528 kb on + strand, within HP15_2751at 2904.572 kb on + strand, within HP15_2751at 2904.613 kb on + strand, within HP15_2751at 2904.613 kb on + strand, within HP15_2751at 2904.613 kb on - strand, within HP15_2751at 2904.636 kb on - strand, within HP15_2751at 2904.681 kb on + strand, within HP15_2751at 2904.755 kb on + strand, within HP15_2751at 2904.891 kb on + strand, within HP15_2751at 2904.989 kb on - strand, within HP15_2751at 2905.017 kb on + strand, within HP15_2751at 2905.076 kb on - strand, within HP15_2751at 2905.334 kb on - strand, within HP15_2751at 2905.452 kb on + strand, within HP15_2751at 2905.551 kb on + strand, within HP15_2751at 2905.556 kb on + strand, within HP15_2751at 2905.598 kb on + strand, within HP15_2751at 2905.604 kb on + strand, within HP15_2751at 2905.651 kb on + strand, within HP15_2751at 2905.762 kb on + strand, within HP15_2751at 2905.770 kb on - strand, within HP15_2751at 2905.781 kb on + strand, within HP15_2751at 2905.783 kb on + strand, within HP15_2751at 2905.795 kb on + strand, within HP15_2751at 2905.805 kb on + strand, within HP15_2751at 2905.856 kb on - strand, within HP15_2751at 2905.922 kb on + strandat 2905.930 kb on - strandat 2906.063 kb on + strandat 2906.142 kb on + strandat 2906.164 kb on + strandat 2906.167 kb on - strandat 2906.196 kb on - strandat 2906.337 kb on + strand, within HP15_2752at 2906.393 kb on + strand, within HP15_2752at 2906.448 kb on + strand, within HP15_2752at 2906.493 kb on - strand, within HP15_2752at 2906.498 kb on - strand, within HP15_2752at 2906.498 kb on - strand, within HP15_2752at 2906.572 kb on + strand, within HP15_2752at 2906.782 kb on + strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.905 kb on - strand, within HP15_2752at 2906.934 kb on + strand, within HP15_2752at 2907.027 kb on + strand, within HP15_2752

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,903,394 - HP15_2750 0.71 +1.1
2,903,424 - HP15_2750 0.72 +0.0
2,903,439 - HP15_2750 0.73 -0.5
2,903,465 + HP15_2750 0.74 +0.5
2,903,551 + HP15_2750 0.76 +2.0
2,903,655 + HP15_2750 0.79 +1.1
2,903,663 - HP15_2750 0.80 +0.3
2,903,668 - HP15_2750 0.80 -0.4
2,903,705 - HP15_2750 0.81 -0.4
2,903,803 - HP15_2750 0.84 -0.8
2,903,855 + HP15_2750 0.86 +0.6
2,903,861 - HP15_2750 0.86 +0.0
2,903,863 - HP15_2750 0.86 +0.1
2,903,964 + HP15_2750 0.89 -0.7
2,903,989 - HP15_2750 0.90 +1.3
2,903,997 + HP15_2750 0.90 -0.1
2,904,010 - -0.3
2,904,062 + +0.4
2,904,093 + -0.7
2,904,183 - -0.2
2,904,185 + +1.8
2,904,193 - +0.2
2,904,193 - -2.5
2,904,244 + +1.3
2,904,488 - +0.6
2,904,495 + -1.3
2,904,528 + HP15_2751 0.11 +1.1
2,904,572 + HP15_2751 0.14 +1.3
2,904,613 + HP15_2751 0.16 -0.1
2,904,613 + HP15_2751 0.16 -0.9
2,904,613 - HP15_2751 0.16 -0.9
2,904,636 - HP15_2751 0.17 -1.8
2,904,681 + HP15_2751 0.20 -0.6
2,904,755 + HP15_2751 0.24 -1.1
2,904,891 + HP15_2751 0.32 +0.5
2,904,989 - HP15_2751 0.38 -0.6
2,905,017 + HP15_2751 0.40 -2.0
2,905,076 - HP15_2751 0.43 -0.5
2,905,334 - HP15_2751 0.58 -1.0
2,905,452 + HP15_2751 0.65 +0.5
2,905,551 + HP15_2751 0.71 -0.4
2,905,556 + HP15_2751 0.72 +0.8
2,905,598 + HP15_2751 0.74 -0.9
2,905,604 + HP15_2751 0.74 -0.2
2,905,651 + HP15_2751 0.77 -2.6
2,905,762 + HP15_2751 0.84 -0.3
2,905,770 - HP15_2751 0.84 -0.8
2,905,781 + HP15_2751 0.85 -0.4
2,905,783 + HP15_2751 0.85 -0.6
2,905,795 + HP15_2751 0.86 +2.2
2,905,805 + HP15_2751 0.86 +0.1
2,905,856 - HP15_2751 0.89 -2.0
2,905,922 + +0.8
2,905,930 - -0.0
2,906,063 + -1.0
2,906,142 + +0.5
2,906,164 + -1.0
2,906,167 - -0.6
2,906,196 - +0.0
2,906,337 + HP15_2752 0.13 -0.2
2,906,393 + HP15_2752 0.16 +1.4
2,906,448 + HP15_2752 0.19 +0.4
2,906,493 - HP15_2752 0.21 +0.3
2,906,498 - HP15_2752 0.22 -0.6
2,906,498 - HP15_2752 0.22 -1.9
2,906,572 + HP15_2752 0.25 +0.3
2,906,782 + HP15_2752 0.37 -0.1
2,906,895 - HP15_2752 0.43 +1.1
2,906,895 - HP15_2752 0.43 +1.0
2,906,895 - HP15_2752 0.43 +0.3
2,906,895 - HP15_2752 0.43 -0.8
2,906,895 - HP15_2752 0.43 -0.3
2,906,895 - HP15_2752 0.43 +0.4
2,906,895 - HP15_2752 0.43 -0.9
2,906,905 - HP15_2752 0.43 +0.0
2,906,934 + HP15_2752 0.45 +1.9
2,907,027 + HP15_2752 0.50 +0.7

Or see this region's nucleotide sequence