Strain Fitness in Marinobacter adhaerens HP15 around HP15_2024

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2023 and HP15_2024 are separated by 28 nucleotidesHP15_2024 and HP15_2025 are separated by 32 nucleotidesHP15_2025 and HP15_2026 are separated by 44 nucleotides HP15_2023: HP15_2023 - UDP-glucuronic acid epimerase, at 2,124,133 to 2,125,140 _2023 HP15_2024: HP15_2024 - conserved hypothetical protein, secreted, at 2,125,169 to 2,125,906 _2024 HP15_2025: HP15_2025 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,125,939 to 2,126,652 _2025 HP15_2026: HP15_2026 - lipoprotein, at 2,126,697 to 2,127,761 _2026 Position (kb) 2125 2126Strain fitness (log2 ratio) -2 -1 0 1at 2125.463 kb on - strand, within HP15_2024at 2125.512 kb on - strand, within HP15_2024at 2125.667 kb on - strand, within HP15_2024at 2125.704 kb on + strand, within HP15_2024at 2125.843 kb on - strandat 2126.809 kb on - strand, within HP15_2026at 2126.809 kb on - strand, within HP15_2026

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,125,463 - HP15_2024 0.40 -0.1
2,125,512 - HP15_2024 0.46 -0.5
2,125,667 - HP15_2024 0.67 -0.3
2,125,704 + HP15_2024 0.72 -1.4
2,125,843 - +0.7
2,126,809 - HP15_2026 0.11 -2.1
2,126,809 - HP15_2026 0.11 -0.2

Or see this region's nucleotide sequence