Strain Fitness in Marinobacter adhaerens HP15 around HP15_1757

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1756 and HP15_1757 are separated by 400 nucleotidesHP15_1757 and HP15_1758 are separated by 98 nucleotidesHP15_1758 and HP15_1759 are separated by 199 nucleotides HP15_1756: HP15_1756 - electron transfer flavoprotein, beta subunit, at 1,854,745 to 1,855,494 _1756 HP15_1757: HP15_1757 - electron-transferring-flavoprotein dehydrogenase, at 1,855,895 to 1,857,565 _1757 HP15_1758: HP15_1758 - peptidylprolyl isomerase, FKBP-type, at 1,857,664 to 1,858,125 _1758 HP15_1759: HP15_1759 - protein containing DUF1285, at 1,858,325 to 1,858,891 _1759 Position (kb) 1855 1856 1857 1858Strain fitness (log2 ratio) -1 0 1 2at 1857.533 kb on - strandat 1857.925 kb on + strand, within HP15_1758at 1858.200 kb on + strandat 1858.208 kb on - strandat 1858.424 kb on + strand, within HP15_1759at 1858.479 kb on + strand, within HP15_1759at 1858.563 kb on - strand, within HP15_1759

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,857,533 - +0.4
1,857,925 + HP15_1758 0.56 -1.7
1,858,200 + +0.3
1,858,208 - -0.6
1,858,424 + HP15_1759 0.17 +2.3
1,858,479 + HP15_1759 0.27 +0.1
1,858,563 - HP15_1759 0.42 +1.3

Or see this region's nucleotide sequence