Strain Fitness in Marinobacter adhaerens HP15 around HP15_1377

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1375 and HP15_1376 are separated by 391 nucleotidesHP15_1376 and HP15_1377 are separated by 57 nucleotidesHP15_1377 and HP15_1378 are separated by 172 nucleotidesHP15_1378 and HP15_1379 are separated by 379 nucleotides HP15_1375: HP15_1375 - cation diffusion facilitator family transporter, at 1,449,993 to 1,451,151 _1375 HP15_1376: HP15_1376 - hypothetical protein, at 1,451,543 to 1,451,647 _1376 HP15_1377: HP15_1377 - dihydroorotate dehydrogenase, at 1,451,705 to 1,452,580 _1377 HP15_1378: HP15_1378 - ribosome modulation factor, at 1,452,753 to 1,452,944 _1378 HP15_1379: HP15_1379 - RNA methylase, at 1,453,324 to 1,455,459 _1379 Position (kb) 1451 1452 1453Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1450.778 kb on - strand, within HP15_1375at 1450.780 kb on + strand, within HP15_1375at 1450.827 kb on - strand, within HP15_1375at 1450.852 kb on + strand, within HP15_1375at 1450.860 kb on - strand, within HP15_1375at 1450.937 kb on - strand, within HP15_1375at 1451.250 kb on - strandat 1451.752 kb on - strandat 1452.098 kb on - strand, within HP15_1377at 1452.479 kb on + strand, within HP15_1377at 1452.603 kb on + strandat 1452.688 kb on + strandat 1452.768 kb on - strandat 1452.991 kb on + strandat 1453.004 kb on - strandat 1453.069 kb on - strandat 1453.069 kb on - strandat 1453.074 kb on - strandat 1453.287 kb on + strandat 1453.397 kb on + strandat 1453.406 kb on + strandat 1453.406 kb on + strandat 1453.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,450,778 - HP15_1375 0.68 +1.1
1,450,780 + HP15_1375 0.68 +0.0
1,450,827 - HP15_1375 0.72 -0.4
1,450,852 + HP15_1375 0.74 -0.4
1,450,860 - HP15_1375 0.75 -1.9
1,450,937 - HP15_1375 0.81 -0.1
1,451,250 - -0.7
1,451,752 - -4.5
1,452,098 - HP15_1377 0.45 -5.4
1,452,479 + HP15_1377 0.88 -5.2
1,452,603 + +0.9
1,452,688 + -0.1
1,452,768 - +1.7
1,452,991 + -2.3
1,453,004 - -0.9
1,453,069 - -0.8
1,453,069 - -0.4
1,453,074 - -0.7
1,453,287 + +0.9
1,453,397 + -0.1
1,453,406 + +0.5
1,453,406 + -0.4
1,453,414 - -1.6

Or see this region's nucleotide sequence