Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1081 and HP15_1082 are separated by 0 nucleotides HP15_1082 and HP15_1083 are separated by 38 nucleotides
HP15_1081: HP15_1081 - phage integrase family protein, at 1,109,355 to 1,110,704
_1081
HP15_1082: HP15_1082 - hypothetical protein, at 1,110,705 to 1,111,835
_1082
HP15_1083: HP15_1083 - conserved hypothetical protein, at 1,111,874 to 1,112,836
_1083
Position (kb)
1110
1111
1112 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1109.937 kb on - strand, within HP15_1081 at 1110.007 kb on + strand, within HP15_1081 at 1110.199 kb on - strand, within HP15_1081 at 1110.199 kb on - strand, within HP15_1081 at 1110.310 kb on - strand, within HP15_1081 at 1110.355 kb on - strand, within HP15_1081 at 1110.380 kb on - strand, within HP15_1081 at 1110.390 kb on - strand, within HP15_1081 at 1110.425 kb on - strand, within HP15_1081 at 1110.542 kb on + strand, within HP15_1081 at 1110.544 kb on + strand, within HP15_1081 at 1110.550 kb on - strand, within HP15_1081 at 1110.550 kb on - strand, within HP15_1081 at 1110.558 kb on - strand, within HP15_1081 at 1110.568 kb on - strand, within HP15_1081 at 1110.628 kb on + strand at 1110.818 kb on + strand, within HP15_1082 at 1110.818 kb on + strand, within HP15_1082 at 1110.818 kb on + strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.845 kb on + strand, within HP15_1082 at 1110.850 kb on + strand, within HP15_1082 at 1110.888 kb on - strand, within HP15_1082 at 1110.935 kb on - strand, within HP15_1082 at 1110.935 kb on - strand, within HP15_1082 at 1111.226 kb on + strand, within HP15_1082 at 1111.226 kb on + strand, within HP15_1082 at 1111.234 kb on - strand, within HP15_1082 at 1111.234 kb on - strand, within HP15_1082 at 1111.234 kb on - strand, within HP15_1082 at 1111.281 kb on + strand, within HP15_1082 at 1111.289 kb on - strand, within HP15_1082 at 1112.156 kb on - strand, within HP15_1083 at 1112.185 kb on + strand, within HP15_1083 at 1112.299 kb on - strand, within HP15_1083 at 1112.642 kb on - strand, within HP15_1083 at 1112.698 kb on + strand, within HP15_1083
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 1,109,937 - HP15_1081 0.43 -0.3 1,110,007 + HP15_1081 0.48 -0.8 1,110,199 - HP15_1081 0.63 +0.3 1,110,199 - HP15_1081 0.63 -1.8 1,110,310 - HP15_1081 0.71 -1.2 1,110,355 - HP15_1081 0.74 -1.0 1,110,380 - HP15_1081 0.76 +0.9 1,110,390 - HP15_1081 0.77 -0.2 1,110,425 - HP15_1081 0.79 -3.1 1,110,542 + HP15_1081 0.88 +0.2 1,110,544 + HP15_1081 0.88 +0.5 1,110,550 - HP15_1081 0.89 -0.9 1,110,550 - HP15_1081 0.89 -0.6 1,110,558 - HP15_1081 0.89 +0.0 1,110,568 - HP15_1081 0.90 -1.1 1,110,628 + +0.5 1,110,818 + HP15_1082 0.10 -0.2 1,110,818 + HP15_1082 0.10 -1.0 1,110,818 + HP15_1082 0.10 +0.4 1,110,826 - HP15_1082 0.11 -1.0 1,110,826 - HP15_1082 0.11 +2.1 1,110,826 - HP15_1082 0.11 -1.4 1,110,826 - HP15_1082 0.11 +0.4 1,110,845 + HP15_1082 0.12 +1.1 1,110,850 + HP15_1082 0.13 -0.2 1,110,888 - HP15_1082 0.16 -2.5 1,110,935 - HP15_1082 0.20 +0.6 1,110,935 - HP15_1082 0.20 -0.6 1,111,226 + HP15_1082 0.46 +1.4 1,111,226 + HP15_1082 0.46 +0.7 1,111,234 - HP15_1082 0.47 +1.1 1,111,234 - HP15_1082 0.47 -1.9 1,111,234 - HP15_1082 0.47 +1.3 1,111,281 + HP15_1082 0.51 -1.7 1,111,289 - HP15_1082 0.52 -1.2 1,112,156 - HP15_1083 0.29 -0.0 1,112,185 + HP15_1083 0.32 +1.5 1,112,299 - HP15_1083 0.44 +0.1 1,112,642 - HP15_1083 0.80 +0.6 1,112,698 + HP15_1083 0.86 +0.6
Or see this region's nucleotide sequence