Strain Fitness in Marinobacter adhaerens HP15 around HP15_1082

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1081 and HP15_1082 are separated by 0 nucleotidesHP15_1082 and HP15_1083 are separated by 38 nucleotides HP15_1081: HP15_1081 - phage integrase family protein, at 1,109,355 to 1,110,704 _1081 HP15_1082: HP15_1082 - hypothetical protein, at 1,110,705 to 1,111,835 _1082 HP15_1083: HP15_1083 - conserved hypothetical protein, at 1,111,874 to 1,112,836 _1083 Position (kb) 1110 1111 1112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1109.937 kb on - strand, within HP15_1081at 1110.007 kb on + strand, within HP15_1081at 1110.199 kb on - strand, within HP15_1081at 1110.199 kb on - strand, within HP15_1081at 1110.310 kb on - strand, within HP15_1081at 1110.355 kb on - strand, within HP15_1081at 1110.380 kb on - strand, within HP15_1081at 1110.390 kb on - strand, within HP15_1081at 1110.425 kb on - strand, within HP15_1081at 1110.542 kb on + strand, within HP15_1081at 1110.544 kb on + strand, within HP15_1081at 1110.550 kb on - strand, within HP15_1081at 1110.550 kb on - strand, within HP15_1081at 1110.558 kb on - strand, within HP15_1081at 1110.568 kb on - strand, within HP15_1081at 1110.628 kb on + strandat 1110.818 kb on + strand, within HP15_1082at 1110.818 kb on + strand, within HP15_1082at 1110.818 kb on + strand, within HP15_1082at 1110.826 kb on - strand, within HP15_1082at 1110.826 kb on - strand, within HP15_1082at 1110.826 kb on - strand, within HP15_1082at 1110.826 kb on - strand, within HP15_1082at 1110.845 kb on + strand, within HP15_1082at 1110.850 kb on + strand, within HP15_1082at 1110.888 kb on - strand, within HP15_1082at 1110.935 kb on - strand, within HP15_1082at 1110.935 kb on - strand, within HP15_1082at 1111.226 kb on + strand, within HP15_1082at 1111.226 kb on + strand, within HP15_1082at 1111.234 kb on - strand, within HP15_1082at 1111.234 kb on - strand, within HP15_1082at 1111.234 kb on - strand, within HP15_1082at 1111.281 kb on + strand, within HP15_1082at 1111.289 kb on - strand, within HP15_1082at 1112.156 kb on - strand, within HP15_1083at 1112.185 kb on + strand, within HP15_1083at 1112.299 kb on - strand, within HP15_1083at 1112.642 kb on - strand, within HP15_1083at 1112.698 kb on + strand, within HP15_1083

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,109,937 - HP15_1081 0.43 -0.3
1,110,007 + HP15_1081 0.48 -0.8
1,110,199 - HP15_1081 0.63 +0.3
1,110,199 - HP15_1081 0.63 -1.8
1,110,310 - HP15_1081 0.71 -1.2
1,110,355 - HP15_1081 0.74 -1.0
1,110,380 - HP15_1081 0.76 +0.9
1,110,390 - HP15_1081 0.77 -0.2
1,110,425 - HP15_1081 0.79 -3.1
1,110,542 + HP15_1081 0.88 +0.2
1,110,544 + HP15_1081 0.88 +0.5
1,110,550 - HP15_1081 0.89 -0.9
1,110,550 - HP15_1081 0.89 -0.6
1,110,558 - HP15_1081 0.89 +0.0
1,110,568 - HP15_1081 0.90 -1.1
1,110,628 + +0.5
1,110,818 + HP15_1082 0.10 -0.2
1,110,818 + HP15_1082 0.10 -1.0
1,110,818 + HP15_1082 0.10 +0.4
1,110,826 - HP15_1082 0.11 -1.0
1,110,826 - HP15_1082 0.11 +2.1
1,110,826 - HP15_1082 0.11 -1.4
1,110,826 - HP15_1082 0.11 +0.4
1,110,845 + HP15_1082 0.12 +1.1
1,110,850 + HP15_1082 0.13 -0.2
1,110,888 - HP15_1082 0.16 -2.5
1,110,935 - HP15_1082 0.20 +0.6
1,110,935 - HP15_1082 0.20 -0.6
1,111,226 + HP15_1082 0.46 +1.4
1,111,226 + HP15_1082 0.46 +0.7
1,111,234 - HP15_1082 0.47 +1.1
1,111,234 - HP15_1082 0.47 -1.9
1,111,234 - HP15_1082 0.47 +1.3
1,111,281 + HP15_1082 0.51 -1.7
1,111,289 - HP15_1082 0.52 -1.2
1,112,156 - HP15_1083 0.29 -0.0
1,112,185 + HP15_1083 0.32 +1.5
1,112,299 - HP15_1083 0.44 +0.1
1,112,642 - HP15_1083 0.80 +0.6
1,112,698 + HP15_1083 0.86 +0.6

Or see this region's nucleotide sequence