Strain Fitness in Marinobacter adhaerens HP15 around HP15_983

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_982 and HP15_983 are separated by 191 nucleotidesHP15_983 and HP15_984 are separated by 94 nucleotides HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279 _982 HP15_983: HP15_983 - glyoxalase family protein, at 993,471 to 993,974 _983 HP15_984: HP15_984 - transcriptional regulator, LysR family protein, at 994,069 to 994,938 _984 Position (kb) 993 994Strain fitness (log2 ratio) -1 0 1 2at 992.573 kb on - strand, within HP15_982at 992.615 kb on - strand, within HP15_982at 992.704 kb on + strand, within HP15_982at 992.707 kb on - strand, within HP15_982at 992.764 kb on - strand, within HP15_982at 992.876 kb on + strand, within HP15_982at 992.884 kb on - strand, within HP15_982at 993.022 kb on + strandat 993.092 kb on - strandat 993.128 kb on - strandat 993.177 kb on + strandat 993.177 kb on + strandat 993.220 kb on - strandat 993.242 kb on + strandat 993.250 kb on - strandat 993.254 kb on + strandat 993.490 kb on + strandat 993.540 kb on + strand, within HP15_983at 993.766 kb on + strand, within HP15_983at 993.792 kb on + strand, within HP15_983at 993.792 kb on + strand, within HP15_983at 993.800 kb on - strand, within HP15_983at 993.800 kb on - strand, within HP15_983at 993.800 kb on - strand, within HP15_983at 993.807 kb on + strand, within HP15_983at 993.815 kb on - strand, within HP15_983at 993.820 kb on - strand, within HP15_983at 993.820 kb on - strand, within HP15_983at 993.891 kb on - strand, within HP15_983at 993.891 kb on - strand, within HP15_983at 993.895 kb on + strand, within HP15_983at 993.914 kb on + strand, within HP15_983at 993.959 kb on + strandat 993.978 kb on - strandat 993.980 kb on + strandat 993.985 kb on + strandat 993.985 kb on + strandat 993.993 kb on - strandat 994.014 kb on - strandat 994.296 kb on + strand, within HP15_984at 994.296 kb on + strand, within HP15_984at 994.367 kb on + strand, within HP15_984at 994.375 kb on - strand, within HP15_984at 994.388 kb on - strand, within HP15_984at 994.533 kb on - strand, within HP15_984at 994.571 kb on - strand, within HP15_984at 994.690 kb on - strand, within HP15_984at 994.754 kb on + strand, within HP15_984at 994.800 kb on - strand, within HP15_984at 994.818 kb on + strand, within HP15_984at 994.818 kb on + strand, within HP15_984at 994.818 kb on + strand, within HP15_984at 994.818 kb on + strand, within HP15_984at 994.826 kb on - strand, within HP15_984at 994.826 kb on - strand, within HP15_984at 994.826 kb on - strand, within HP15_984at 994.850 kb on + strand, within HP15_984

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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992,573 - HP15_982 0.76 +0.5
992,615 - HP15_982 0.78 -1.0
992,704 + HP15_982 0.81 +0.3
992,707 - HP15_982 0.81 -0.9
992,764 - HP15_982 0.83 -0.4
992,876 + HP15_982 0.86 +0.2
992,884 - HP15_982 0.87 -0.4
993,022 + +0.1
993,092 - +1.3
993,128 - +0.9
993,177 + -1.5
993,177 + +1.8
993,220 - +0.3
993,242 + +0.8
993,250 - +0.2
993,254 + +0.5
993,490 + +0.1
993,540 + HP15_983 0.14 +0.7
993,766 + HP15_983 0.59 +0.4
993,792 + HP15_983 0.64 +1.2
993,792 + HP15_983 0.64 +0.5
993,800 - HP15_983 0.65 -1.0
993,800 - HP15_983 0.65 -1.2
993,800 - HP15_983 0.65 +0.8
993,807 + HP15_983 0.67 -0.2
993,815 - HP15_983 0.68 +0.7
993,820 - HP15_983 0.69 +0.1
993,820 - HP15_983 0.69 -0.7
993,891 - HP15_983 0.83 +1.6
993,891 - HP15_983 0.83 +0.7
993,895 + HP15_983 0.84 -0.5
993,914 + HP15_983 0.88 -0.6
993,959 + -0.4
993,978 - +0.2
993,980 + +0.1
993,985 + +0.4
993,985 + -1.6
993,993 - -0.4
994,014 - +0.8
994,296 + HP15_984 0.26 +0.8
994,296 + HP15_984 0.26 +0.5
994,367 + HP15_984 0.34 +0.2
994,375 - HP15_984 0.35 -0.7
994,388 - HP15_984 0.37 -1.7
994,533 - HP15_984 0.53 +2.2
994,571 - HP15_984 0.58 +0.8
994,690 - HP15_984 0.71 -0.5
994,754 + HP15_984 0.79 -0.4
994,800 - HP15_984 0.84 -0.6
994,818 + HP15_984 0.86 +0.1
994,818 + HP15_984 0.86 -0.6
994,818 + HP15_984 0.86 +0.5
994,818 + HP15_984 0.86 -0.6
994,826 - HP15_984 0.87 -0.7
994,826 - HP15_984 0.87 +2.1
994,826 - HP15_984 0.87 +0.8
994,850 + HP15_984 0.90 +0.6

Or see this region's nucleotide sequence