Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28425

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28415 and RR42_RS28420 are separated by 2 nucleotidesRR42_RS28420 and RR42_RS28425 are separated by 15 nucleotidesRR42_RS28425 and RR42_RS28430 are separated by 15 nucleotidesRR42_RS28430 and RR42_RS28435 are separated by 191 nucleotides RR42_RS28415: RR42_RS28415 - diguanylate cyclase, at 1,735,172 to 1,735,834 _RS28415 RR42_RS28420: RR42_RS28420 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 1,735,837 to 1,736,499 _RS28420 RR42_RS28425: RR42_RS28425 - 3-hydroxybutyryl-CoA dehydratase, at 1,736,515 to 1,737,285 _RS28425 RR42_RS28430: RR42_RS28430 - phenylacetic acid degradation protein, at 1,737,301 to 1,737,723 _RS28430 RR42_RS28435: RR42_RS28435 - amidase, at 1,737,915 to 1,739,441 _RS28435 Position (kb) 1736 1737 1738Strain fitness (log2 ratio) -3 -2 -1 0 1at 1735.533 kb on + strand, within RR42_RS28415at 1735.533 kb on + strand, within RR42_RS28415at 1735.608 kb on + strand, within RR42_RS28415at 1735.609 kb on - strand, within RR42_RS28415at 1736.048 kb on + strand, within RR42_RS28420at 1736.048 kb on + strand, within RR42_RS28420at 1736.049 kb on - strand, within RR42_RS28420at 1736.049 kb on - strand, within RR42_RS28420at 1736.049 kb on - strand, within RR42_RS28420at 1736.278 kb on + strand, within RR42_RS28420at 1736.299 kb on - strand, within RR42_RS28420at 1736.369 kb on + strand, within RR42_RS28420at 1736.370 kb on - strand, within RR42_RS28420at 1736.405 kb on + strand, within RR42_RS28420at 1736.405 kb on + strand, within RR42_RS28420at 1736.485 kb on + strandat 1736.578 kb on - strandat 1736.929 kb on + strand, within RR42_RS28425at 1736.950 kb on + strand, within RR42_RS28425at 1736.951 kb on - strand, within RR42_RS28425at 1737.317 kb on - strandat 1737.342 kb on - strandat 1737.697 kb on - strandat 1737.697 kb on - strandat 1738.091 kb on + strand, within RR42_RS28435at 1738.091 kb on + strand, within RR42_RS28435at 1738.091 kb on + strand, within RR42_RS28435at 1738.092 kb on - strand, within RR42_RS28435at 1738.092 kb on - strand, within RR42_RS28435at 1738.201 kb on + strand, within RR42_RS28435at 1738.201 kb on + strand, within RR42_RS28435at 1738.202 kb on - strand, within RR42_RS28435at 1738.202 kb on - strand, within RR42_RS28435at 1738.202 kb on - strand, within RR42_RS28435at 1738.202 kb on - strand, within RR42_RS28435at 1738.225 kb on + strand, within RR42_RS28435at 1738.225 kb on + strand, within RR42_RS28435

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,735,533 + RR42_RS28415 0.54 -0.3
1,735,533 + RR42_RS28415 0.54 -0.4
1,735,608 + RR42_RS28415 0.66 +0.1
1,735,609 - RR42_RS28415 0.66 +0.5
1,736,048 + RR42_RS28420 0.32 -1.0
1,736,048 + RR42_RS28420 0.32 +1.0
1,736,049 - RR42_RS28420 0.32 -0.7
1,736,049 - RR42_RS28420 0.32 -0.6
1,736,049 - RR42_RS28420 0.32 -0.3
1,736,278 + RR42_RS28420 0.67 -2.5
1,736,299 - RR42_RS28420 0.70 -1.3
1,736,369 + RR42_RS28420 0.80 +1.1
1,736,370 - RR42_RS28420 0.80 -0.3
1,736,405 + RR42_RS28420 0.86 -0.5
1,736,405 + RR42_RS28420 0.86 -0.4
1,736,485 + -0.6
1,736,578 - -1.2
1,736,929 + RR42_RS28425 0.54 +0.5
1,736,950 + RR42_RS28425 0.56 +1.2
1,736,951 - RR42_RS28425 0.57 +0.2
1,737,317 - -0.8
1,737,342 - -0.0
1,737,697 - +1.0
1,737,697 - +0.4
1,738,091 + RR42_RS28435 0.12 -0.2
1,738,091 + RR42_RS28435 0.12 +1.0
1,738,091 + RR42_RS28435 0.12 +0.1
1,738,092 - RR42_RS28435 0.12 +0.4
1,738,092 - RR42_RS28435 0.12 +0.4
1,738,201 + RR42_RS28435 0.19 -1.0
1,738,201 + RR42_RS28435 0.19 +0.7
1,738,202 - RR42_RS28435 0.19 +1.1
1,738,202 - RR42_RS28435 0.19 -1.7
1,738,202 - RR42_RS28435 0.19 +1.4
1,738,202 - RR42_RS28435 0.19 +0.3
1,738,225 + RR42_RS28435 0.20 -2.9
1,738,225 + RR42_RS28435 0.20 +0.5

Or see this region's nucleotide sequence