Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27385

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27380 and RR42_RS27385 are separated by 20 nucleotidesRR42_RS27385 and RR42_RS27390 are separated by 20 nucleotides RR42_RS27380: RR42_RS27380 - 4-aminobutyrate aminotransferase, at 1,494,004 to 1,495,311 _RS27380 RR42_RS27385: RR42_RS27385 - aminoglycoside phosphotransferase, at 1,495,332 to 1,496,369 _RS27385 RR42_RS27390: RR42_RS27390 - acetylpolyamine aminohydrolase, at 1,496,390 to 1,497,418 _RS27390 Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -2 -1 0 1 2at 1494.409 kb on - strand, within RR42_RS27380at 1494.891 kb on - strand, within RR42_RS27380at 1495.034 kb on + strand, within RR42_RS27380at 1495.059 kb on - strand, within RR42_RS27380at 1495.146 kb on + strand, within RR42_RS27380at 1495.146 kb on + strand, within RR42_RS27380at 1495.148 kb on + strand, within RR42_RS27380at 1495.148 kb on + strand, within RR42_RS27380at 1495.149 kb on - strand, within RR42_RS27380at 1495.438 kb on + strand, within RR42_RS27385at 1495.439 kb on - strand, within RR42_RS27385at 1495.727 kb on + strand, within RR42_RS27385at 1495.728 kb on - strand, within RR42_RS27385at 1495.729 kb on + strand, within RR42_RS27385at 1495.729 kb on + strand, within RR42_RS27385at 1495.729 kb on + strand, within RR42_RS27385at 1495.729 kb on + strand, within RR42_RS27385at 1495.730 kb on - strand, within RR42_RS27385at 1495.730 kb on - strand, within RR42_RS27385at 1495.730 kb on - strand, within RR42_RS27385at 1495.730 kb on - strand, within RR42_RS27385at 1496.023 kb on + strand, within RR42_RS27385at 1496.024 kb on - strand, within RR42_RS27385at 1496.212 kb on + strand, within RR42_RS27385at 1496.649 kb on + strand, within RR42_RS27390at 1496.694 kb on + strand, within RR42_RS27390at 1496.911 kb on - strand, within RR42_RS27390at 1496.937 kb on + strand, within RR42_RS27390at 1496.937 kb on + strand, within RR42_RS27390at 1496.938 kb on - strand, within RR42_RS27390at 1497.117 kb on + strand, within RR42_RS27390at 1497.118 kb on - strand, within RR42_RS27390

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,494,409 - RR42_RS27380 0.31 -0.1
1,494,891 - RR42_RS27380 0.68 +0.0
1,495,034 + RR42_RS27380 0.79 +2.4
1,495,059 - RR42_RS27380 0.81 -2.1
1,495,146 + RR42_RS27380 0.87 -0.2
1,495,146 + RR42_RS27380 0.87 -0.2
1,495,148 + RR42_RS27380 0.87 -0.5
1,495,148 + RR42_RS27380 0.87 +0.4
1,495,149 - RR42_RS27380 0.88 -1.0
1,495,438 + RR42_RS27385 0.10 +0.7
1,495,439 - RR42_RS27385 0.10 +2.0
1,495,727 + RR42_RS27385 0.38 +0.3
1,495,728 - RR42_RS27385 0.38 +0.1
1,495,729 + RR42_RS27385 0.38 +0.8
1,495,729 + RR42_RS27385 0.38 -1.3
1,495,729 + RR42_RS27385 0.38 +0.0
1,495,729 + RR42_RS27385 0.38 -0.9
1,495,730 - RR42_RS27385 0.38 -0.5
1,495,730 - RR42_RS27385 0.38 -0.1
1,495,730 - RR42_RS27385 0.38 +0.3
1,495,730 - RR42_RS27385 0.38 +1.9
1,496,023 + RR42_RS27385 0.67 +0.2
1,496,024 - RR42_RS27385 0.67 -0.3
1,496,212 + RR42_RS27385 0.85 +0.4
1,496,649 + RR42_RS27390 0.25 +0.0
1,496,694 + RR42_RS27390 0.30 -0.6
1,496,911 - RR42_RS27390 0.51 +0.6
1,496,937 + RR42_RS27390 0.53 +0.1
1,496,937 + RR42_RS27390 0.53 -1.0
1,496,938 - RR42_RS27390 0.53 -0.4
1,497,117 + RR42_RS27390 0.71 -0.4
1,497,118 - RR42_RS27390 0.71 -0.3

Or see this region's nucleotide sequence