Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19440 and RR42_RS19445 are separated by 22 nucleotides RR42_RS19445 and RR42_RS19450 are separated by 49 nucleotides RR42_RS19450 and RR42_RS19455 are separated by 10 nucleotides
RR42_RS19440: RR42_RS19440 - DNA repair protein, at 4,199,562 to 4,200,356
_RS19440
RR42_RS19445: RR42_RS19445 - TetR family transcriptional regulator, at 4,200,379 to 4,201,017
_RS19445
RR42_RS19450: RR42_RS19450 - potassium transporter KefC, at 4,201,067 to 4,202,881
_RS19450
RR42_RS19455: RR42_RS19455 - NAD(P)H dehydrogenase, at 4,202,892 to 4,203,473
_RS19455
Position (kb) 4201
4202
4203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4200.107 kb on + strand, within RR42_RS19440 at 4200.107 kb on + strand, within RR42_RS19440 at 4200.108 kb on - strand, within RR42_RS19440 at 4200.126 kb on + strand, within RR42_RS19440 at 4200.127 kb on - strand, within RR42_RS19440 at 4200.354 kb on + strand at 4200.388 kb on - strand at 4200.463 kb on + strand, within RR42_RS19445 at 4200.523 kb on + strand, within RR42_RS19445 at 4200.529 kb on + strand, within RR42_RS19445 at 4200.529 kb on + strand, within RR42_RS19445 at 4200.529 kb on + strand at 4200.530 kb on - strand, within RR42_RS19445 at 4200.530 kb on - strand, within RR42_RS19445 at 4200.530 kb on - strand, within RR42_RS19445 at 4200.530 kb on - strand, within RR42_RS19445 at 4200.532 kb on + strand, within RR42_RS19445 at 4200.532 kb on + strand, within RR42_RS19445 at 4200.533 kb on - strand, within RR42_RS19445 at 4200.575 kb on - strand, within RR42_RS19445 at 4200.577 kb on - strand, within RR42_RS19445 at 4200.577 kb on - strand, within RR42_RS19445 at 4200.577 kb on - strand, within RR42_RS19445 at 4200.649 kb on - strand, within RR42_RS19445 at 4200.685 kb on + strand, within RR42_RS19445 at 4200.922 kb on + strand, within RR42_RS19445 at 4201.015 kb on + strand at 4201.016 kb on - strand at 4201.022 kb on + strand at 4201.022 kb on + strand at 4201.022 kb on + strand at 4201.022 kb on + strand at 4201.022 kb on + strand at 4201.022 kb on + strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.023 kb on - strand at 4201.028 kb on + strand at 4201.028 kb on + strand at 4201.028 kb on + strand at 4201.028 kb on + strand at 4201.182 kb on + strand at 4201.183 kb on - strand at 4201.191 kb on + strand at 4201.386 kb on + strand, within RR42_RS19450 at 4201.386 kb on + strand, within RR42_RS19450 at 4201.387 kb on - strand, within RR42_RS19450 at 4201.387 kb on - strand, within RR42_RS19450 at 4201.387 kb on - strand, within RR42_RS19450 at 4201.387 kb on - strand, within RR42_RS19450 at 4201.527 kb on + strand, within RR42_RS19450 at 4201.527 kb on + strand, within RR42_RS19450 at 4201.528 kb on - strand, within RR42_RS19450 at 4201.528 kb on - strand, within RR42_RS19450 at 4201.528 kb on - strand, within RR42_RS19450 at 4201.528 kb on - strand, within RR42_RS19450 at 4201.545 kb on + strand, within RR42_RS19450 at 4201.545 kb on + strand, within RR42_RS19450 at 4201.546 kb on - strand, within RR42_RS19450 at 4201.611 kb on + strand, within RR42_RS19450 at 4201.612 kb on - strand, within RR42_RS19450 at 4201.612 kb on - strand, within RR42_RS19450 at 4201.895 kb on + strand, within RR42_RS19450 at 4201.895 kb on + strand, within RR42_RS19450 at 4201.896 kb on - strand, within RR42_RS19450 at 4201.896 kb on - strand, within RR42_RS19450 at 4201.896 kb on - strand, within RR42_RS19450 at 4202.009 kb on + strand, within RR42_RS19450 at 4202.034 kb on - strand, within RR42_RS19450 at 4202.034 kb on - strand, within RR42_RS19450 at 4202.216 kb on - strand, within RR42_RS19450 at 4202.216 kb on - strand, within RR42_RS19450 at 4202.271 kb on + strand, within RR42_RS19450 at 4202.778 kb on + strand at 4202.779 kb on - strand at 4202.779 kb on - strand at 4202.970 kb on - strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.116 kb on - strand, within RR42_RS19455 at 4203.116 kb on - strand, within RR42_RS19455 at 4203.190 kb on + strand, within RR42_RS19455 at 4203.191 kb on - strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.312 kb on + strand, within RR42_RS19455 at 4203.312 kb on + strand, within RR42_RS19455 at 4203.329 kb on - strand, within RR42_RS19455 at 4203.335 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.346 kb on + strand, within RR42_RS19455 at 4203.347 kb on - strand, within RR42_RS19455 at 4203.347 kb on - strand, within RR42_RS19455 at 4203.436 kb on + strand at 4203.436 kb on + strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.440 kb on + strand at 4203.440 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.532 kb on - strand at 4203.532 kb on - strand at 4203.686 kb on + strand at 4203.686 kb on + strand at 4203.687 kb on - strand at 4203.697 kb on - strand at 4203.742 kb on + strand at 4203.742 kb on + strand at 4203.743 kb on - strand at 4203.743 kb on - strand at 4203.764 kb on + strand at 4203.807 kb on - strand at 4203.807 kb on - strand at 4203.807 kb on - strand at 4203.855 kb on + strand at 4203.855 kb on + strand at 4203.856 kb on - strand at 4203.856 kb on - strand at 4203.861 kb on + strand at 4203.861 kb on + strand at 4203.871 kb on + strand at 4203.871 kb on + strand at 4203.872 kb on - strand at 4203.872 kb on - strand at 4203.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,200,107 + RR42_RS19440 0.69 -1.4 4,200,107 + RR42_RS19440 0.69 -0.7 4,200,108 - RR42_RS19440 0.69 -0.7 4,200,126 + RR42_RS19440 0.71 -2.1 4,200,127 - RR42_RS19440 0.71 +2.2 4,200,354 + -0.7 4,200,388 - +0.3 4,200,463 + RR42_RS19445 0.13 -0.6 4,200,523 + RR42_RS19445 0.23 -0.9 4,200,529 + RR42_RS19445 0.23 +0.9 4,200,529 + RR42_RS19445 0.23 -0.6 4,200,529 + -0.6 4,200,530 - RR42_RS19445 0.24 -0.7 4,200,530 - RR42_RS19445 0.24 -1.0 4,200,530 - RR42_RS19445 0.24 -0.7 4,200,530 - RR42_RS19445 0.24 -1.6 4,200,532 + RR42_RS19445 0.24 -1.0 4,200,532 + RR42_RS19445 0.24 -0.7 4,200,533 - RR42_RS19445 0.24 -3.5 4,200,575 - RR42_RS19445 0.31 -0.7 4,200,577 - RR42_RS19445 0.31 +0.2 4,200,577 - RR42_RS19445 0.31 -0.9 4,200,577 - RR42_RS19445 0.31 -0.2 4,200,649 - RR42_RS19445 0.42 +0.1 4,200,685 + RR42_RS19445 0.48 +2.4 4,200,922 + RR42_RS19445 0.85 +0.9 4,201,015 + +0.1 4,201,016 - +0.9 4,201,022 + -1.6 4,201,022 + +0.1 4,201,022 + -0.1 4,201,022 + -1.1 4,201,022 + -0.1 4,201,022 + +1.0 4,201,023 - +0.4 4,201,023 - +0.3 4,201,023 - +0.3 4,201,023 - -0.4 4,201,023 - +0.2 4,201,023 - +0.7 4,201,023 - -0.0 4,201,023 - +1.9 4,201,023 - -0.3 4,201,023 - -0.0 4,201,028 + +1.1 4,201,028 + +0.5 4,201,028 + -2.1 4,201,028 + -0.4 4,201,182 + -0.3 4,201,183 - -1.9 4,201,191 + +1.0 4,201,386 + RR42_RS19450 0.18 +0.2 4,201,386 + RR42_RS19450 0.18 -0.4 4,201,387 - RR42_RS19450 0.18 -0.9 4,201,387 - RR42_RS19450 0.18 -0.5 4,201,387 - RR42_RS19450 0.18 +0.4 4,201,387 - RR42_RS19450 0.18 +0.2 4,201,527 + RR42_RS19450 0.25 +0.6 4,201,527 + RR42_RS19450 0.25 +2.1 4,201,528 - RR42_RS19450 0.25 +0.3 4,201,528 - RR42_RS19450 0.25 -0.7 4,201,528 - RR42_RS19450 0.25 -0.9 4,201,528 - RR42_RS19450 0.25 +1.2 4,201,545 + RR42_RS19450 0.26 +0.2 4,201,545 + RR42_RS19450 0.26 +0.9 4,201,546 - RR42_RS19450 0.26 +1.4 4,201,611 + RR42_RS19450 0.30 +0.2 4,201,612 - RR42_RS19450 0.30 -0.3 4,201,612 - RR42_RS19450 0.30 +0.4 4,201,895 + RR42_RS19450 0.46 -0.1 4,201,895 + RR42_RS19450 0.46 +0.3 4,201,896 - RR42_RS19450 0.46 +1.1 4,201,896 - RR42_RS19450 0.46 -0.1 4,201,896 - RR42_RS19450 0.46 +0.4 4,202,009 + RR42_RS19450 0.52 -0.9 4,202,034 - RR42_RS19450 0.53 -0.3 4,202,034 - RR42_RS19450 0.53 +1.0 4,202,216 - RR42_RS19450 0.63 +0.1 4,202,216 - RR42_RS19450 0.63 +0.8 4,202,271 + RR42_RS19450 0.66 +1.9 4,202,778 + +0.0 4,202,779 - +0.2 4,202,779 - +1.6 4,202,970 - RR42_RS19455 0.13 -0.4 4,203,076 + RR42_RS19455 0.32 -0.4 4,203,076 + RR42_RS19455 0.32 +1.0 4,203,076 + RR42_RS19455 0.32 -0.7 4,203,076 + RR42_RS19455 0.32 +1.6 4,203,076 + RR42_RS19455 0.32 -0.8 4,203,076 + RR42_RS19455 0.32 -0.6 4,203,077 - RR42_RS19455 0.32 +0.7 4,203,077 - RR42_RS19455 0.32 -0.3 4,203,077 - RR42_RS19455 0.32 -0.7 4,203,077 - RR42_RS19455 0.32 +0.0 4,203,116 - RR42_RS19455 0.38 -0.0 4,203,116 - RR42_RS19455 0.38 -2.1 4,203,190 + RR42_RS19455 0.51 +0.0 4,203,191 - RR42_RS19455 0.51 +0.8 4,203,250 + RR42_RS19455 0.62 +0.6 4,203,250 + RR42_RS19455 0.62 -0.3 4,203,250 + RR42_RS19455 0.62 +2.8 4,203,251 - RR42_RS19455 0.62 -0.6 4,203,251 - RR42_RS19455 0.62 +1.4 4,203,251 - RR42_RS19455 0.62 -1.6 4,203,312 + RR42_RS19455 0.72 +1.0 4,203,312 + RR42_RS19455 0.72 -2.5 4,203,329 - RR42_RS19455 0.75 -1.1 4,203,335 + RR42_RS19455 0.76 -0.5 4,203,337 + RR42_RS19455 0.76 -0.6 4,203,337 + RR42_RS19455 0.76 +0.1 4,203,337 + RR42_RS19455 0.76 +0.2 4,203,337 + RR42_RS19455 0.76 -0.8 4,203,337 + RR42_RS19455 0.76 -0.2 4,203,337 + RR42_RS19455 0.76 +0.0 4,203,337 + RR42_RS19455 0.76 -0.3 4,203,337 + RR42_RS19455 0.76 -0.7 4,203,337 + RR42_RS19455 0.76 -1.0 4,203,337 + RR42_RS19455 0.76 +0.1 4,203,338 - RR42_RS19455 0.77 -0.6 4,203,338 - RR42_RS19455 0.77 -0.1 4,203,338 - RR42_RS19455 0.77 +1.2 4,203,346 + RR42_RS19455 0.78 +0.2 4,203,347 - RR42_RS19455 0.78 -0.1 4,203,347 - RR42_RS19455 0.78 -1.2 4,203,436 + +0.4 4,203,436 + +2.4 4,203,437 - +0.8 4,203,437 - -0.5 4,203,437 - -0.7 4,203,437 - -0.4 4,203,437 - -0.6 4,203,437 - -0.3 4,203,440 + -0.5 4,203,440 + -0.5 4,203,531 + -0.1 4,203,531 + -0.3 4,203,531 + +0.8 4,203,531 + +1.7 4,203,531 + +0.2 4,203,531 + +0.9 4,203,532 - +0.2 4,203,532 - +0.2 4,203,686 + +0.2 4,203,686 + +0.4 4,203,687 - +0.4 4,203,697 - +1.7 4,203,742 + +1.4 4,203,742 + +0.6 4,203,743 - -0.6 4,203,743 - -0.7 4,203,764 + -0.0 4,203,807 - +1.0 4,203,807 - -0.6 4,203,807 - -0.4 4,203,855 + +0.2 4,203,855 + +0.6 4,203,856 - -2.8 4,203,856 - -2.7 4,203,861 + +2.4 4,203,861 + -0.4 4,203,871 + +0.3 4,203,871 + -0.4 4,203,872 - -2.5 4,203,872 - -1.2 4,203,872 - +0.1
Or see this region's nucleotide sequence