Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18630 and RR42_RS18635 are separated by 150 nucleotides RR42_RS18635 and RR42_RS18640 are separated by 44 nucleotides RR42_RS18640 and RR42_RS18645 are separated by 190 nucleotides
RR42_RS18630: RR42_RS18630 - hypothetical protein, at 4,031,992 to 4,032,924
_RS18630
RR42_RS18635: RR42_RS18635 - polysaccharide deacetylase, at 4,033,075 to 4,034,079
_RS18635
RR42_RS18640: RR42_RS18640 - ester cyclase, at 4,034,124 to 4,034,672
_RS18640
RR42_RS18645: RR42_RS18645 - endo alpha-1,4 polygalactosaminidase, at 4,034,863 to 4,035,750
_RS18645
Position (kb) 4033
4034
4035 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4032.231 kb on - strand, within RR42_RS18630 at 4032.288 kb on + strand, within RR42_RS18630 at 4032.288 kb on + strand, within RR42_RS18630 at 4032.288 kb on + strand, within RR42_RS18630 at 4032.288 kb on + strand, within RR42_RS18630 at 4032.288 kb on + strand, within RR42_RS18630 at 4032.288 kb on + strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.289 kb on - strand, within RR42_RS18630 at 4032.292 kb on + strand, within RR42_RS18630 at 4032.292 kb on + strand, within RR42_RS18630 at 4032.292 kb on + strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.293 kb on - strand, within RR42_RS18630 at 4032.700 kb on + strand, within RR42_RS18630 at 4032.700 kb on + strand, within RR42_RS18630 at 4032.700 kb on + strand, within RR42_RS18630 at 4032.700 kb on + strand, within RR42_RS18630 at 4032.701 kb on - strand, within RR42_RS18630 at 4032.701 kb on - strand, within RR42_RS18630 at 4032.729 kb on + strand, within RR42_RS18630 at 4032.772 kb on + strand, within RR42_RS18630 at 4032.867 kb on + strand at 4032.868 kb on - strand at 4032.908 kb on - strand at 4032.914 kb on + strand at 4032.914 kb on + strand at 4033.010 kb on - strand at 4033.039 kb on + strand at 4033.040 kb on - strand at 4033.080 kb on + strand at 4033.080 kb on + strand at 4033.081 kb on - strand at 4033.154 kb on + strand at 4033.155 kb on - strand at 4033.155 kb on - strand at 4033.155 kb on - strand at 4033.155 kb on - strand at 4033.155 kb on - strand at 4033.155 kb on - strand at 4033.361 kb on - strand, within RR42_RS18635 at 4033.370 kb on - strand, within RR42_RS18635 at 4033.387 kb on + strand, within RR42_RS18635 at 4033.387 kb on + strand, within RR42_RS18635 at 4033.387 kb on + strand, within RR42_RS18635 at 4033.388 kb on - strand, within RR42_RS18635 at 4033.388 kb on - strand, within RR42_RS18635 at 4033.388 kb on - strand, within RR42_RS18635 at 4033.388 kb on - strand, within RR42_RS18635 at 4033.393 kb on + strand, within RR42_RS18635 at 4033.393 kb on + strand, within RR42_RS18635 at 4033.394 kb on - strand, within RR42_RS18635 at 4033.464 kb on + strand, within RR42_RS18635 at 4033.464 kb on + strand, within RR42_RS18635 at 4033.464 kb on + strand, within RR42_RS18635 at 4033.464 kb on + strand, within RR42_RS18635 at 4033.465 kb on - strand, within RR42_RS18635 at 4033.465 kb on - strand, within RR42_RS18635 at 4033.598 kb on - strand, within RR42_RS18635 at 4033.683 kb on + strand, within RR42_RS18635 at 4033.717 kb on + strand, within RR42_RS18635 at 4033.717 kb on + strand, within RR42_RS18635 at 4033.718 kb on - strand, within RR42_RS18635 at 4033.763 kb on + strand, within RR42_RS18635 at 4033.763 kb on + strand, within RR42_RS18635 at 4033.792 kb on + strand, within RR42_RS18635 at 4033.793 kb on - strand, within RR42_RS18635 at 4033.793 kb on - strand, within RR42_RS18635 at 4033.793 kb on - strand, within RR42_RS18635 at 4033.888 kb on + strand, within RR42_RS18635 at 4033.889 kb on - strand, within RR42_RS18635 at 4034.078 kb on - strand at 4034.078 kb on - strand at 4034.101 kb on + strand at 4034.101 kb on + strand at 4034.102 kb on - strand at 4034.102 kb on - strand at 4034.113 kb on + strand at 4034.114 kb on - strand at 4034.114 kb on - strand at 4034.441 kb on - strand, within RR42_RS18640 at 4034.470 kb on + strand, within RR42_RS18640 at 4034.470 kb on + strand, within RR42_RS18640 at 4034.471 kb on - strand, within RR42_RS18640 at 4034.471 kb on - strand, within RR42_RS18640 at 4034.471 kb on - strand, within RR42_RS18640 at 4034.471 kb on - strand, within RR42_RS18640 at 4034.471 kb on - strand, within RR42_RS18640 at 4034.471 kb on - strand, within RR42_RS18640 at 4034.670 kb on + strand at 4034.670 kb on + strand at 4034.670 kb on + strand at 4034.671 kb on - strand at 4034.671 kb on - strand at 4034.671 kb on - strand at 4034.843 kb on - strand at 4034.916 kb on + strand at 4034.975 kb on + strand, within RR42_RS18645 at 4034.976 kb on - strand, within RR42_RS18645 at 4034.987 kb on + strand, within RR42_RS18645 at 4035.032 kb on + strand, within RR42_RS18645 at 4035.032 kb on + strand, within RR42_RS18645 at 4035.032 kb on + strand, within RR42_RS18645 at 4035.050 kb on + strand, within RR42_RS18645 at 4035.050 kb on + strand, within RR42_RS18645 at 4035.050 kb on + strand, within RR42_RS18645 at 4035.051 kb on - strand, within RR42_RS18645 at 4035.051 kb on - strand, within RR42_RS18645
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,032,231 - RR42_RS18630 0.26 -1.8 4,032,288 + RR42_RS18630 0.32 +2.7 4,032,288 + RR42_RS18630 0.32 -0.6 4,032,288 + RR42_RS18630 0.32 +0.2 4,032,288 + RR42_RS18630 0.32 +0.8 4,032,288 + RR42_RS18630 0.32 +0.2 4,032,288 + RR42_RS18630 0.32 -0.8 4,032,289 - RR42_RS18630 0.32 -0.4 4,032,289 - RR42_RS18630 0.32 +0.2 4,032,289 - RR42_RS18630 0.32 +0.8 4,032,289 - RR42_RS18630 0.32 +0.0 4,032,289 - RR42_RS18630 0.32 +1.0 4,032,289 - RR42_RS18630 0.32 +0.2 4,032,289 - RR42_RS18630 0.32 -0.2 4,032,289 - RR42_RS18630 0.32 -0.4 4,032,289 - RR42_RS18630 0.32 +0.8 4,032,289 - RR42_RS18630 0.32 +0.4 4,032,292 + RR42_RS18630 0.32 -0.7 4,032,292 + RR42_RS18630 0.32 +0.6 4,032,292 + RR42_RS18630 0.32 -0.4 4,032,293 - RR42_RS18630 0.32 +0.7 4,032,293 - RR42_RS18630 0.32 +0.8 4,032,293 - RR42_RS18630 0.32 +0.5 4,032,293 - RR42_RS18630 0.32 -1.0 4,032,293 - RR42_RS18630 0.32 +0.4 4,032,293 - RR42_RS18630 0.32 +0.2 4,032,293 - RR42_RS18630 0.32 -0.1 4,032,293 - RR42_RS18630 0.32 +1.3 4,032,700 + RR42_RS18630 0.76 +1.7 4,032,700 + RR42_RS18630 0.76 +3.5 4,032,700 + RR42_RS18630 0.76 -0.6 4,032,700 + RR42_RS18630 0.76 +0.6 4,032,701 - RR42_RS18630 0.76 -1.4 4,032,701 - RR42_RS18630 0.76 -0.6 4,032,729 + RR42_RS18630 0.79 -0.1 4,032,772 + RR42_RS18630 0.84 +1.0 4,032,867 + -0.9 4,032,868 - +0.7 4,032,908 - +0.6 4,032,914 + +0.4 4,032,914 + +1.4 4,033,010 - +0.2 4,033,039 + +0.1 4,033,040 - +0.2 4,033,080 + +2.4 4,033,080 + +0.5 4,033,081 - +0.4 4,033,154 + +0.2 4,033,155 - +0.3 4,033,155 - -0.1 4,033,155 - -0.5 4,033,155 - -0.2 4,033,155 - -0.3 4,033,155 - -1.2 4,033,361 - RR42_RS18635 0.28 +0.2 4,033,370 - RR42_RS18635 0.29 +1.4 4,033,387 + RR42_RS18635 0.31 -0.1 4,033,387 + RR42_RS18635 0.31 +1.4 4,033,387 + RR42_RS18635 0.31 +2.0 4,033,388 - RR42_RS18635 0.31 +0.8 4,033,388 - RR42_RS18635 0.31 -0.2 4,033,388 - RR42_RS18635 0.31 -0.1 4,033,388 - RR42_RS18635 0.31 -0.1 4,033,393 + RR42_RS18635 0.32 -0.3 4,033,393 + RR42_RS18635 0.32 +0.1 4,033,394 - RR42_RS18635 0.32 +0.3 4,033,464 + RR42_RS18635 0.39 -0.2 4,033,464 + RR42_RS18635 0.39 +1.4 4,033,464 + RR42_RS18635 0.39 +0.3 4,033,464 + RR42_RS18635 0.39 +0.5 4,033,465 - RR42_RS18635 0.39 +0.7 4,033,465 - RR42_RS18635 0.39 +0.6 4,033,598 - RR42_RS18635 0.52 +1.4 4,033,683 + RR42_RS18635 0.60 +0.9 4,033,717 + RR42_RS18635 0.64 -0.1 4,033,717 + RR42_RS18635 0.64 -0.1 4,033,718 - RR42_RS18635 0.64 +0.2 4,033,763 + RR42_RS18635 0.68 +0.0 4,033,763 + RR42_RS18635 0.68 +0.4 4,033,792 + RR42_RS18635 0.71 +0.9 4,033,793 - RR42_RS18635 0.71 -0.4 4,033,793 - RR42_RS18635 0.71 -0.1 4,033,793 - RR42_RS18635 0.71 +0.1 4,033,888 + RR42_RS18635 0.81 +0.6 4,033,889 - RR42_RS18635 0.81 -1.3 4,034,078 - +0.0 4,034,078 - -0.0 4,034,101 + +0.5 4,034,101 + +0.7 4,034,102 - -1.7 4,034,102 - -1.0 4,034,113 + +0.5 4,034,114 - +0.2 4,034,114 - -0.1 4,034,441 - RR42_RS18640 0.58 +0.8 4,034,470 + RR42_RS18640 0.63 -0.2 4,034,470 + RR42_RS18640 0.63 -0.7 4,034,471 - RR42_RS18640 0.63 -0.2 4,034,471 - RR42_RS18640 0.63 -0.3 4,034,471 - RR42_RS18640 0.63 +0.7 4,034,471 - RR42_RS18640 0.63 -0.2 4,034,471 - RR42_RS18640 0.63 +0.5 4,034,471 - RR42_RS18640 0.63 +0.2 4,034,670 + -0.5 4,034,670 + -1.3 4,034,670 + +1.6 4,034,671 - +0.3 4,034,671 - -1.4 4,034,671 - +1.2 4,034,843 - +0.2 4,034,916 + +0.0 4,034,975 + RR42_RS18645 0.13 -0.8 4,034,976 - RR42_RS18645 0.13 +0.8 4,034,987 + RR42_RS18645 0.14 +0.3 4,035,032 + RR42_RS18645 0.19 +0.2 4,035,032 + RR42_RS18645 0.19 +0.3 4,035,032 + RR42_RS18645 0.19 -0.2 4,035,050 + RR42_RS18645 0.21 +0.6 4,035,050 + RR42_RS18645 0.21 -0.3 4,035,050 + RR42_RS18645 0.21 +0.5 4,035,051 - RR42_RS18645 0.21 -0.2 4,035,051 - RR42_RS18645 0.21 -0.3
Or see this region's nucleotide sequence