Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04665

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04655 and RR42_RS04660 overlap by 53 nucleotidesRR42_RS04660 and RR42_RS04665 are separated by 11 nucleotidesRR42_RS04665 and RR42_RS04670 overlap by 4 nucleotides RR42_RS04655: RR42_RS04655 - glycosyl transferase, at 1,037,796 to 1,039,052 _RS04655 RR42_RS04660: RR42_RS04660 - glycosyl transferase family 2, at 1,039,000 to 1,039,767 _RS04660 RR42_RS04665: RR42_RS04665 - cell shape-determining protein, at 1,039,779 to 1,041,032 _RS04665 RR42_RS04670: RR42_RS04670 - lipid transporter ATP-binding/permease, at 1,041,029 to 1,042,798 _RS04670 Position (kb) 1039 1040 1041 1042Strain fitness (log2 ratio) -1 0 1at 1039.778 kb on + strandat 1040.989 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,039,778 + +1.2
1,040,989 + +1.2

Or see this region's nucleotide sequence