Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04620 and RR42_RS04625 are separated by 40 nucleotides RR42_RS04625 and RR42_RS04630 are separated by 81 nucleotides RR42_RS04630 and RR42_RS04635 are separated by 75 nucleotides RR42_RS04635 and RR42_RS04640 are separated by 143 nucleotides
RR42_RS04620: RR42_RS04620 - 30S ribosomal protein S16, at 1,029,932 to 1,030,186
_RS04620
RR42_RS04625: RR42_RS04625 - 16S rRNA processing protein RimM, at 1,030,227 to 1,030,934
_RS04625
RR42_RS04630: RR42_RS04630 - tRNA (guanine-N1)-methyltransferase, at 1,031,016 to 1,031,822
_RS04630
RR42_RS04635: RR42_RS04635 - 50S ribosomal protein L19, at 1,031,898 to 1,032,305
_RS04635
RR42_RS04640: RR42_RS04640 - DNA mismatch repair protein MutT, at 1,032,449 to 1,033,129
_RS04640
Position (kb)
1031
1032 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1030.929 kb on + strand at 1030.929 kb on + strand at 1031.001 kb on + strand at 1032.256 kb on - strand, within RR42_RS04635 at 1032.448 kb on + strand at 1032.448 kb on + strand at 1032.448 kb on + strand at 1032.448 kb on + strand at 1032.448 kb on + strand at 1032.448 kb on + strand at 1032.449 kb on - strand at 1032.449 kb on - strand at 1032.449 kb on - strand at 1032.605 kb on + strand, within RR42_RS04640 at 1032.606 kb on - strand, within RR42_RS04640 at 1032.606 kb on - strand, within RR42_RS04640 at 1032.821 kb on + strand, within RR42_RS04640 at 1032.822 kb on - strand, within RR42_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,030,929 + -0.0 1,030,929 + +1.8 1,031,001 + +0.4 1,032,256 - RR42_RS04635 0.88 -1.9 1,032,448 + -0.4 1,032,448 + -0.6 1,032,448 + +0.2 1,032,448 + -1.1 1,032,448 + +0.0 1,032,448 + -0.0 1,032,449 - +0.2 1,032,449 - -1.0 1,032,449 - -1.7 1,032,605 + RR42_RS04640 0.23 +1.0 1,032,606 - RR42_RS04640 0.23 +0.4 1,032,606 - RR42_RS04640 0.23 -0.5 1,032,821 + RR42_RS04640 0.55 -0.4 1,032,822 - RR42_RS04640 0.55 -0.2
Or see this region's nucleotide sequence