Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04630

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04620 and RR42_RS04625 are separated by 40 nucleotidesRR42_RS04625 and RR42_RS04630 are separated by 81 nucleotidesRR42_RS04630 and RR42_RS04635 are separated by 75 nucleotidesRR42_RS04635 and RR42_RS04640 are separated by 143 nucleotides RR42_RS04620: RR42_RS04620 - 30S ribosomal protein S16, at 1,029,932 to 1,030,186 _RS04620 RR42_RS04625: RR42_RS04625 - 16S rRNA processing protein RimM, at 1,030,227 to 1,030,934 _RS04625 RR42_RS04630: RR42_RS04630 - tRNA (guanine-N1)-methyltransferase, at 1,031,016 to 1,031,822 _RS04630 RR42_RS04635: RR42_RS04635 - 50S ribosomal protein L19, at 1,031,898 to 1,032,305 _RS04635 RR42_RS04640: RR42_RS04640 - DNA mismatch repair protein MutT, at 1,032,449 to 1,033,129 _RS04640 Position (kb) 1031 1032Strain fitness (log2 ratio) -2 -1 0 1 2at 1030.929 kb on + strandat 1030.929 kb on + strandat 1031.001 kb on + strandat 1032.256 kb on - strand, within RR42_RS04635at 1032.448 kb on + strandat 1032.448 kb on + strandat 1032.448 kb on + strandat 1032.448 kb on + strandat 1032.448 kb on + strandat 1032.448 kb on + strandat 1032.449 kb on - strandat 1032.449 kb on - strandat 1032.449 kb on - strandat 1032.605 kb on + strand, within RR42_RS04640at 1032.606 kb on - strand, within RR42_RS04640at 1032.606 kb on - strand, within RR42_RS04640at 1032.821 kb on + strand, within RR42_RS04640at 1032.822 kb on - strand, within RR42_RS04640

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,030,929 + -0.0
1,030,929 + +1.8
1,031,001 + +0.4
1,032,256 - RR42_RS04635 0.88 -1.9
1,032,448 + -0.4
1,032,448 + -0.6
1,032,448 + +0.2
1,032,448 + -1.1
1,032,448 + +0.0
1,032,448 + -0.0
1,032,449 - +0.2
1,032,449 - -1.0
1,032,449 - -1.7
1,032,605 + RR42_RS04640 0.23 +1.0
1,032,606 - RR42_RS04640 0.23 +0.4
1,032,606 - RR42_RS04640 0.23 -0.5
1,032,821 + RR42_RS04640 0.55 -0.4
1,032,822 - RR42_RS04640 0.55 -0.2

Or see this region's nucleotide sequence