Strain Fitness in Marinobacter adhaerens HP15 around HP15_601

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_600 and HP15_601 are separated by 173 nucleotidesHP15_601 and HP15_602 are separated by 5 nucleotidesHP15_602 and HP15_603 are separated by 70 nucleotides HP15_600: HP15_600 - GGDEF domain protein, at 620,922 to 621,938 _600 HP15_601: HP15_601 - gamma-glutamyl phosphate reductase, at 622,112 to 623,368 _601 HP15_602: HP15_602 - nicotinic acid mononucleotide adenyltransferase, at 623,374 to 624,024 _602 HP15_603: HP15_603 - Iojap-related protein, at 624,095 to 624,445 _603 Position (kb) 622 623 624Strain fitness (log2 ratio) -2 -1 0 1 2at 621.222 kb on - strand, within HP15_600at 621.323 kb on - strand, within HP15_600at 621.371 kb on - strand, within HP15_600at 621.556 kb on - strand, within HP15_600at 621.646 kb on + strand, within HP15_600at 621.646 kb on + strand, within HP15_600at 621.681 kb on + strand, within HP15_600at 621.831 kb on + strand, within HP15_600at 621.839 kb on - strandat 621.853 kb on + strandat 621.861 kb on - strandat 623.991 kb on + strandat 623.991 kb on + strandat 624.267 kb on + strand, within HP15_603

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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621,222 - HP15_600 0.29 -0.1
621,323 - HP15_600 0.39 -0.1
621,371 - HP15_600 0.44 +1.7
621,556 - HP15_600 0.62 -1.2
621,646 + HP15_600 0.71 +1.2
621,646 + HP15_600 0.71 +2.0
621,681 + HP15_600 0.75 -1.8
621,831 + HP15_600 0.89 -1.0
621,839 - -0.0
621,853 + -0.3
621,861 - +1.0
623,991 + -0.2
623,991 + +1.4
624,267 + HP15_603 0.49 -0.4

Or see this region's nucleotide sequence