Strain Fitness in Marinobacter adhaerens HP15 around HP15_581

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_580 and HP15_581 are separated by 133 nucleotidesHP15_581 and HP15_582 overlap by 1 nucleotidesHP15_582 and HP15_583 are separated by 55 nucleotides HP15_580: HP15_580 - 1-deoxy-D-xylulose-5-phosphate synthase, at 601,393 to 603,324 _580 HP15_581: HP15_581 - geranyltranstransferase, at 603,458 to 604,354 _581 HP15_582: HP15_582 - exonuclease VII, small subunit, at 604,354 to 604,608 _582 HP15_583: HP15_583 - protein containing DUF833, at 604,664 to 605,437 _583 Position (kb) 603 604 605Strain fitness (log2 ratio) -2 -1 0 1at 604.225 kb on - strand, within HP15_581at 604.369 kb on - strandat 604.509 kb on - strand, within HP15_582at 604.651 kb on - strandat 604.651 kb on - strandat 604.829 kb on + strand, within HP15_583at 604.912 kb on + strand, within HP15_583at 604.920 kb on - strand, within HP15_583at 605.013 kb on + strand, within HP15_583at 605.090 kb on - strand, within HP15_583at 605.114 kb on - strand, within HP15_583at 605.132 kb on - strand, within HP15_583at 605.134 kb on - strand, within HP15_583at 605.163 kb on + strand, within HP15_583at 605.238 kb on + strand, within HP15_583at 605.246 kb on - strand, within HP15_583at 605.246 kb on - strand, within HP15_583at 605.336 kb on + strand, within HP15_583

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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604,225 - HP15_581 0.86 -2.2
604,369 - +0.9
604,509 - HP15_582 0.61 -1.7
604,651 - +1.5
604,651 - -0.4
604,829 + HP15_583 0.21 -2.2
604,912 + HP15_583 0.32 +0.9
604,920 - HP15_583 0.33 +1.6
605,013 + HP15_583 0.45 -0.2
605,090 - HP15_583 0.55 -0.2
605,114 - HP15_583 0.58 +0.9
605,132 - HP15_583 0.60 +1.0
605,134 - HP15_583 0.61 +0.2
605,163 + HP15_583 0.64 +0.4
605,238 + HP15_583 0.74 -0.9
605,246 - HP15_583 0.75 +0.8
605,246 - HP15_583 0.75 -0.9
605,336 + HP15_583 0.87 -1.1

Or see this region's nucleotide sequence