Strain Fitness in Marinobacter adhaerens HP15 around HP15_516

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_515 and HP15_516 are separated by 588 nucleotidesHP15_516 and HP15_517 are separated by 68 nucleotidesHP15_517 and HP15_518 overlap by 4 nucleotides HP15_515: HP15_515 - hydroxymethylbutenyl pyrophosphate reductase, at 528,190 to 529,143 _515 HP15_516: HP15_516 - hypothetical protein, at 529,732 to 529,857 _516 HP15_517: HP15_517 - membrane or secreted protein, at 529,926 to 530,321 _517 HP15_518: HP15_518 - type IV pilus assembly protein PilW, at 530,318 to 531,349 _518 Position (kb) 529 530Strain fitness (log2 ratio) -1 0 1at 529.138 kb on + strandat 529.138 kb on + strandat 529.174 kb on - strandat 529.239 kb on + strandat 529.268 kb on + strandat 529.421 kb on - strandat 529.430 kb on - strandat 529.467 kb on - strandat 529.479 kb on - strandat 529.556 kb on - strandat 529.556 kb on - strandat 529.568 kb on - strandat 529.860 kb on - strandat 529.898 kb on + strandat 529.906 kb on - strandat 530.152 kb on + strand, within HP15_517at 530.160 kb on - strand, within HP15_517at 530.215 kb on - strand, within HP15_517at 530.254 kb on + strand, within HP15_517at 530.627 kb on - strand, within HP15_518at 530.727 kb on + strand, within HP15_518

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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529,138 + -0.2
529,138 + -0.8
529,174 - +0.6
529,239 + +0.8
529,268 + -0.3
529,421 - +0.4
529,430 - +0.4
529,467 - +0.2
529,479 - -0.8
529,556 - -0.1
529,556 - -0.3
529,568 - +0.4
529,860 - +0.1
529,898 + -0.3
529,906 - +0.6
530,152 + HP15_517 0.57 -0.6
530,160 - HP15_517 0.59 -0.2
530,215 - HP15_517 0.73 -0.1
530,254 + HP15_517 0.83 +0.8
530,627 - HP15_518 0.30 -0.3
530,727 + HP15_518 0.40 -0.3

Or see this region's nucleotide sequence