Strain Fitness in Marinobacter adhaerens HP15 around HP15_468

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_466 and HP15_467 are separated by 90 nucleotidesHP15_467 and HP15_468 are separated by 5 nucleotidesHP15_468 and HP15_469 are separated by 154 nucleotides HP15_466: HP15_466 - ATP-dependent protease peptidase subunit, at 473,187 to 473,717 _466 HP15_467: HP15_467 - cell division protein, at 473,808 to 474,440 _467 HP15_468: HP15_468 - arginyl-tRNA synthetase, at 474,446 to 476,131 _468 HP15_469: HP15_469 - Ig domain protein, group 1 domain protein, at 476,286 to 478,148 _469 Position (kb) 474 475 476 477Strain fitness (log2 ratio) -1 0 1 2at 473.480 kb on - strand, within HP15_466at 473.502 kb on - strand, within HP15_466at 473.800 kb on - strandat 476.351 kb on - strandat 476.369 kb on - strandat 476.476 kb on + strand, within HP15_469at 476.594 kb on + strand, within HP15_469at 476.751 kb on + strand, within HP15_469at 476.853 kb on + strand, within HP15_469at 476.921 kb on - strand, within HP15_469at 476.945 kb on - strand, within HP15_469at 476.967 kb on + strand, within HP15_469at 477.076 kb on + strand, within HP15_469at 477.093 kb on + strand, within HP15_469

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
473,480 - HP15_466 0.55 -0.4
473,502 - HP15_466 0.59 -0.2
473,800 - -0.3
476,351 - +0.9
476,369 - -1.0
476,476 + HP15_469 0.10 +1.0
476,594 + HP15_469 0.17 +0.6
476,751 + HP15_469 0.25 +0.5
476,853 + HP15_469 0.30 -1.0
476,921 - HP15_469 0.34 +0.5
476,945 - HP15_469 0.35 +1.7
476,967 + HP15_469 0.37 -0.6
477,076 + HP15_469 0.42 +1.3
477,093 + HP15_469 0.43 +2.5

Or see this region's nucleotide sequence