Strain Fitness in Marinobacter adhaerens HP15 around HP15_467

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_465 and HP15_466 are separated by 12 nucleotidesHP15_466 and HP15_467 are separated by 90 nucleotidesHP15_467 and HP15_468 are separated by 5 nucleotides HP15_465: HP15_465 - heat shock protein HslVU, ATPase subunit HslU, at 471,846 to 473,174 _465 HP15_466: HP15_466 - ATP-dependent protease peptidase subunit, at 473,187 to 473,717 _466 HP15_467: HP15_467 - cell division protein, at 473,808 to 474,440 _467 HP15_468: HP15_468 - arginyl-tRNA synthetase, at 474,446 to 476,131 _468 Position (kb) 473 474 475Strain fitness (log2 ratio) -1 0 1at 472.837 kb on + strand, within HP15_465at 473.002 kb on - strand, within HP15_465at 473.052 kb on + strandat 473.215 kb on - strandat 473.215 kb on - strandat 473.215 kb on - strandat 473.356 kb on + strand, within HP15_466at 473.437 kb on + strand, within HP15_466at 473.438 kb on + strand, within HP15_466at 473.480 kb on - strand, within HP15_466at 473.502 kb on - strand, within HP15_466at 473.800 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
472,837 + HP15_465 0.75 -0.5
473,002 - HP15_465 0.87 +0.4
473,052 + +0.3
473,215 - +0.2
473,215 - -0.4
473,215 - -1.1
473,356 + HP15_466 0.32 +0.4
473,437 + HP15_466 0.47 -0.2
473,438 + HP15_466 0.47 -1.6
473,480 - HP15_466 0.55 -0.4
473,502 - HP15_466 0.59 -0.2
473,800 - -0.3

Or see this region's nucleotide sequence