Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g35 and HP15_p187g36 are separated by 104 nucleotides HP15_p187g36 and HP15_p187g37 are separated by 44 nucleotides HP15_p187g37 and HP15_p187g38 are separated by 23 nucleotides
HP15_p187g35: HP15_p187g35 - hypothetical protein, at 27,944 to 28,771
_p187g35
HP15_p187g36: HP15_p187g36 - hypothetical protein, at 28,876 to 29,406
_p187g36
HP15_p187g37: HP15_p187g37 - integral membrane protein, transporter, at 29,451 to 31,496
_p187g37
HP15_p187g38: HP15_p187g38 - RND type efflux pump involved in aminoglycoside resistance (AdeT), at 31,520 to 32,551
_p187g38
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.581 kb on - strand, within HP15_p187g35 at 28.623 kb on + strand, within HP15_p187g35 at 28.631 kb on - strand, within HP15_p187g35 at 28.645 kb on + strand, within HP15_p187g35 at 28.693 kb on - strand at 28.693 kb on - strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.774 kb on - strand at 28.774 kb on - strand at 28.774 kb on - strand at 28.793 kb on - strand at 28.858 kb on + strand at 28.873 kb on + strand at 28.881 kb on - strand at 28.943 kb on + strand, within HP15_p187g36 at 28.943 kb on + strand, within HP15_p187g36 at 28.951 kb on - strand, within HP15_p187g36 at 29.014 kb on - strand, within HP15_p187g36 at 29.084 kb on + strand, within HP15_p187g36 at 29.092 kb on - strand, within HP15_p187g36 at 29.094 kb on + strand, within HP15_p187g36 at 29.107 kb on + strand, within HP15_p187g36 at 29.107 kb on + strand, within HP15_p187g36 at 29.108 kb on + strand, within HP15_p187g36 at 29.110 kb on - strand, within HP15_p187g36 at 29.145 kb on + strand, within HP15_p187g36 at 29.153 kb on - strand, within HP15_p187g36 at 29.153 kb on - strand, within HP15_p187g36 at 29.252 kb on - strand, within HP15_p187g36 at 29.271 kb on + strand, within HP15_p187g36 at 29.318 kb on + strand, within HP15_p187g36 at 29.318 kb on + strand, within HP15_p187g36 at 29.326 kb on - strand, within HP15_p187g36 at 29.326 kb on - strand, within HP15_p187g36 at 29.326 kb on - strand, within HP15_p187g36 at 29.388 kb on + strand at 29.448 kb on + strand at 29.448 kb on + strand at 29.456 kb on - strand at 29.461 kb on + strand at 29.469 kb on - strand at 29.487 kb on + strand at 29.512 kb on - strand at 29.662 kb on - strand, within HP15_p187g37 at 29.662 kb on - strand, within HP15_p187g37 at 29.741 kb on + strand, within HP15_p187g37 at 29.817 kb on - strand, within HP15_p187g37 at 29.832 kb on - strand, within HP15_p187g37 at 29.864 kb on - strand, within HP15_p187g37 at 29.913 kb on + strand, within HP15_p187g37 at 29.997 kb on - strand, within HP15_p187g37 at 30.030 kb on - strand, within HP15_p187g37 at 30.039 kb on + strand, within HP15_p187g37 at 30.039 kb on + strand, within HP15_p187g37 at 30.039 kb on + strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.057 kb on - strand, within HP15_p187g37 at 30.073 kb on - strand, within HP15_p187g37 at 30.085 kb on - strand, within HP15_p187g37 at 30.142 kb on - strand, within HP15_p187g37 at 30.214 kb on + strand, within HP15_p187g37 at 30.288 kb on + strand, within HP15_p187g37 at 30.296 kb on - strand, within HP15_p187g37 at 30.353 kb on + strand, within HP15_p187g37 at 30.361 kb on - strand, within HP15_p187g37 at 30.491 kb on - strand, within HP15_p187g37 at 30.491 kb on - strand, within HP15_p187g37 at 30.532 kb on - strand, within HP15_p187g37 at 30.540 kb on + strand, within HP15_p187g37 at 30.574 kb on + strand, within HP15_p187g37 at 30.593 kb on + strand, within HP15_p187g37 at 30.610 kb on + strand, within HP15_p187g37 at 30.674 kb on + strand, within HP15_p187g37 at 30.711 kb on + strand, within HP15_p187g37 at 30.711 kb on + strand, within HP15_p187g37 at 30.714 kb on - strand, within HP15_p187g37 at 30.714 kb on - strand, within HP15_p187g37 at 30.719 kb on - strand, within HP15_p187g37 at 30.731 kb on - strand, within HP15_p187g37 at 30.756 kb on + strand, within HP15_p187g37 at 30.764 kb on - strand, within HP15_p187g37 at 30.773 kb on - strand, within HP15_p187g37 at 30.781 kb on + strand, within HP15_p187g37 at 30.869 kb on + strand, within HP15_p187g37 at 30.878 kb on + strand, within HP15_p187g37 at 30.886 kb on - strand, within HP15_p187g37 at 30.960 kb on + strand, within HP15_p187g37 at 31.023 kb on + strand, within HP15_p187g37 at 31.052 kb on + strand, within HP15_p187g37 at 31.091 kb on - strand, within HP15_p187g37 at 31.091 kb on - strand, within HP15_p187g37 at 31.128 kb on + strand, within HP15_p187g37 at 31.136 kb on - strand, within HP15_p187g37 at 31.143 kb on + strand, within HP15_p187g37 at 31.148 kb on - strand, within HP15_p187g37 at 31.151 kb on - strand, within HP15_p187g37 at 31.169 kb on + strand, within HP15_p187g37 at 31.169 kb on + strand, within HP15_p187g37 at 31.169 kb on + strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.219 kb on + strand, within HP15_p187g37 at 31.219 kb on + strand, within HP15_p187g37 at 31.219 kb on + strand, within HP15_p187g37 at 31.227 kb on - strand, within HP15_p187g37 at 31.300 kb on + strand at 31.347 kb on + strand at 31.355 kb on - strand at 31.355 kb on - strand at 31.357 kb on + strand at 31.380 kb on - strand at 31.384 kb on + strand at 31.384 kb on + strand at 31.392 kb on - strand at 31.392 kb on - strand at 31.392 kb on - strand at 31.392 kb on - strand at 31.396 kb on + strand at 31.396 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.436 kb on + strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.484 kb on + strand at 31.536 kb on + strand at 31.536 kb on + strand at 31.536 kb on + strand at 31.543 kb on + strand at 31.623 kb on + strand at 31.631 kb on - strand, within HP15_p187g38 at 31.650 kb on - strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.685 kb on - strand, within HP15_p187g38 at 31.685 kb on - strand, within HP15_p187g38 at 31.714 kb on + strand, within HP15_p187g38 at 31.749 kb on + strand, within HP15_p187g38 at 31.774 kb on - strand, within HP15_p187g38 at 31.787 kb on + strand, within HP15_p187g38 at 31.862 kb on + strand, within HP15_p187g38 at 31.867 kb on + strand, within HP15_p187g38 at 31.881 kb on + strand, within HP15_p187g38 at 31.881 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.889 kb on - strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.891 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.936 kb on - strand, within HP15_p187g38 at 31.943 kb on + strand, within HP15_p187g38 at 31.988 kb on + strand, within HP15_p187g38 at 31.989 kb on + strand, within HP15_p187g38 at 31.996 kb on + strand, within HP15_p187g38 at 31.998 kb on - strand, within HP15_p187g38 at 31.998 kb on - strand, within HP15_p187g38 at 31.998 kb on - strand, within HP15_p187g38 at 32.049 kb on - strand, within HP15_p187g38 at 32.143 kb on + strand, within HP15_p187g38 at 32.143 kb on + strand, within HP15_p187g38 at 32.143 kb on + strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.180 kb on + strand, within HP15_p187g38 at 32.193 kb on - strand, within HP15_p187g38 at 32.233 kb on - strand, within HP15_p187g38 at 32.249 kb on - strand, within HP15_p187g38 at 32.277 kb on + strand, within HP15_p187g38 at 32.280 kb on - strand, within HP15_p187g38 at 32.285 kb on - strand, within HP15_p187g38 at 32.285 kb on - strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.355 kb on + strand, within HP15_p187g38 at 32.356 kb on + strand, within HP15_p187g38 at 32.357 kb on - strand, within HP15_p187g38 at 32.464 kb on - strand at 32.476 kb on + strand at 32.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 28,581 - HP15_p187g35 0.77 -1.9 28,623 + HP15_p187g35 0.82 +1.0 28,631 - HP15_p187g35 0.83 +0.3 28,645 + HP15_p187g35 0.85 -1.8 28,693 - +1.6 28,693 - -1.2 28,766 + +0.6 28,766 + -0.9 28,766 + -1.4 28,766 + -0.3 28,766 + +0.4 28,774 - +0.1 28,774 - -0.1 28,774 - -0.0 28,793 - +2.1 28,858 + -0.4 28,873 + -1.2 28,881 - +0.0 28,943 + HP15_p187g36 0.13 +1.5 28,943 + HP15_p187g36 0.13 -1.3 28,951 - HP15_p187g36 0.14 +1.1 29,014 - HP15_p187g36 0.26 -1.1 29,084 + HP15_p187g36 0.39 -0.5 29,092 - HP15_p187g36 0.41 -0.1 29,094 + HP15_p187g36 0.41 -0.9 29,107 + HP15_p187g36 0.44 -1.7 29,107 + HP15_p187g36 0.44 +1.0 29,108 + HP15_p187g36 0.44 -0.1 29,110 - HP15_p187g36 0.44 -0.5 29,145 + HP15_p187g36 0.51 -0.0 29,153 - HP15_p187g36 0.52 -1.5 29,153 - HP15_p187g36 0.52 +0.1 29,252 - HP15_p187g36 0.71 -0.4 29,271 + HP15_p187g36 0.74 -0.7 29,318 + HP15_p187g36 0.83 -0.9 29,318 + HP15_p187g36 0.83 +2.2 29,326 - HP15_p187g36 0.85 +0.7 29,326 - HP15_p187g36 0.85 -0.4 29,326 - HP15_p187g36 0.85 -1.3 29,388 + -0.2 29,448 + -0.3 29,448 + +0.0 29,456 - +1.2 29,461 + -0.4 29,469 - -1.9 29,487 + +1.2 29,512 - -0.1 29,662 - HP15_p187g37 0.10 +1.0 29,662 - HP15_p187g37 0.10 -0.5 29,741 + HP15_p187g37 0.14 +0.8 29,817 - HP15_p187g37 0.18 +1.3 29,832 - HP15_p187g37 0.19 +0.2 29,864 - HP15_p187g37 0.20 -1.0 29,913 + HP15_p187g37 0.23 +2.6 29,997 - HP15_p187g37 0.27 +1.6 30,030 - HP15_p187g37 0.28 +0.3 30,039 + HP15_p187g37 0.29 +0.0 30,039 + HP15_p187g37 0.29 -0.8 30,039 + HP15_p187g37 0.29 +1.7 30,047 - HP15_p187g37 0.29 +0.2 30,047 - HP15_p187g37 0.29 -0.3 30,047 - HP15_p187g37 0.29 +1.0 30,047 - HP15_p187g37 0.29 -0.5 30,057 - HP15_p187g37 0.30 +0.5 30,073 - HP15_p187g37 0.30 -0.1 30,085 - HP15_p187g37 0.31 -0.8 30,142 - HP15_p187g37 0.34 +0.1 30,214 + HP15_p187g37 0.37 -0.2 30,288 + HP15_p187g37 0.41 +1.0 30,296 - HP15_p187g37 0.41 +0.1 30,353 + HP15_p187g37 0.44 +0.0 30,361 - HP15_p187g37 0.44 +0.2 30,491 - HP15_p187g37 0.51 -1.0 30,491 - HP15_p187g37 0.51 -0.9 30,532 - HP15_p187g37 0.53 -0.3 30,540 + HP15_p187g37 0.53 +1.2 30,574 + HP15_p187g37 0.55 +0.4 30,593 + HP15_p187g37 0.56 +0.7 30,610 + HP15_p187g37 0.57 -0.4 30,674 + HP15_p187g37 0.60 -0.0 30,711 + HP15_p187g37 0.62 -0.2 30,711 + HP15_p187g37 0.62 +0.4 30,714 - HP15_p187g37 0.62 -1.3 30,714 - HP15_p187g37 0.62 -0.2 30,719 - HP15_p187g37 0.62 -0.4 30,731 - HP15_p187g37 0.63 -0.5 30,756 + HP15_p187g37 0.64 +0.4 30,764 - HP15_p187g37 0.64 +0.5 30,773 - HP15_p187g37 0.65 +0.1 30,781 + HP15_p187g37 0.65 +1.4 30,869 + HP15_p187g37 0.69 -0.3 30,878 + HP15_p187g37 0.70 -0.5 30,886 - HP15_p187g37 0.70 +0.4 30,960 + HP15_p187g37 0.74 +1.2 31,023 + HP15_p187g37 0.77 -0.3 31,052 + HP15_p187g37 0.78 -1.3 31,091 - HP15_p187g37 0.80 -2.5 31,091 - HP15_p187g37 0.80 -0.9 31,128 + HP15_p187g37 0.82 -1.5 31,136 - HP15_p187g37 0.82 -0.7 31,143 + HP15_p187g37 0.83 -0.5 31,148 - HP15_p187g37 0.83 -0.4 31,151 - HP15_p187g37 0.83 -0.9 31,169 + HP15_p187g37 0.84 +0.5 31,169 + HP15_p187g37 0.84 +0.0 31,169 + HP15_p187g37 0.84 -0.4 31,177 - HP15_p187g37 0.84 +1.0 31,177 - HP15_p187g37 0.84 +0.7 31,177 - HP15_p187g37 0.84 -0.0 31,177 - HP15_p187g37 0.84 +0.6 31,177 - HP15_p187g37 0.84 -1.1 31,177 - HP15_p187g37 0.84 -0.5 31,219 + HP15_p187g37 0.86 -1.5 31,219 + HP15_p187g37 0.86 +0.4 31,219 + HP15_p187g37 0.86 -0.1 31,227 - HP15_p187g37 0.87 +1.4 31,300 + +1.2 31,347 + -0.5 31,355 - +0.3 31,355 - -0.5 31,357 + +0.9 31,380 - +0.6 31,384 + +0.7 31,384 + -0.9 31,392 - -0.3 31,392 - +1.1 31,392 - +0.1 31,392 - +1.3 31,396 + -1.2 31,396 + -1.4 31,430 + +0.8 31,430 + -0.3 31,430 + +1.3 31,430 + +1.7 31,430 + +0.9 31,430 + -0.5 31,430 + -0.0 31,430 + -1.2 31,430 + -0.4 31,430 + -0.2 31,430 + -1.3 31,436 + -1.5 31,438 - +0.5 31,438 - -1.1 31,438 - +0.7 31,438 - -0.0 31,438 - -0.3 31,438 - -0.5 31,438 - +0.1 31,438 - +0.6 31,438 - +1.2 31,438 - -0.3 31,438 - -0.3 31,438 - +1.1 31,464 - +1.1 31,464 - +0.2 31,464 - +0.5 31,464 - -0.3 31,464 - -0.8 31,484 + +0.4 31,536 + +0.2 31,536 + -0.2 31,536 + -0.0 31,543 + +0.1 31,623 + +0.7 31,631 - HP15_p187g38 0.11 +0.0 31,650 - HP15_p187g38 0.13 -1.5 31,677 + HP15_p187g38 0.15 -1.7 31,677 + HP15_p187g38 0.15 +1.6 31,677 + HP15_p187g38 0.15 +1.0 31,677 + HP15_p187g38 0.15 +1.2 31,677 + HP15_p187g38 0.15 +0.7 31,677 + HP15_p187g38 0.15 -0.9 31,677 + HP15_p187g38 0.15 -0.2 31,677 + HP15_p187g38 0.15 +1.0 31,677 + HP15_p187g38 0.15 -1.7 31,685 - HP15_p187g38 0.16 +0.7 31,685 - HP15_p187g38 0.16 +0.9 31,714 + HP15_p187g38 0.19 +1.5 31,749 + HP15_p187g38 0.22 +0.9 31,774 - HP15_p187g38 0.25 +1.4 31,787 + HP15_p187g38 0.26 +1.5 31,862 + HP15_p187g38 0.33 +0.4 31,867 + HP15_p187g38 0.34 +0.2 31,881 + HP15_p187g38 0.35 +1.3 31,881 + HP15_p187g38 0.35 -0.5 31,883 + HP15_p187g38 0.35 +0.9 31,883 + HP15_p187g38 0.35 -0.1 31,883 + HP15_p187g38 0.35 -0.9 31,883 + HP15_p187g38 0.35 +1.2 31,889 - HP15_p187g38 0.36 +0.6 31,890 + HP15_p187g38 0.36 -0.7 31,890 + HP15_p187g38 0.36 -0.6 31,890 + HP15_p187g38 0.36 -0.8 31,890 + HP15_p187g38 0.36 -0.7 31,890 + HP15_p187g38 0.36 +2.0 31,891 - HP15_p187g38 0.36 -1.6 31,898 - HP15_p187g38 0.37 +0.2 31,898 - HP15_p187g38 0.37 -0.7 31,898 - HP15_p187g38 0.37 -1.7 31,898 - HP15_p187g38 0.37 +2.1 31,898 - HP15_p187g38 0.37 +0.0 31,898 - HP15_p187g38 0.37 +1.3 31,936 - HP15_p187g38 0.40 -2.0 31,943 + HP15_p187g38 0.41 -0.7 31,988 + HP15_p187g38 0.45 -0.1 31,989 + HP15_p187g38 0.45 +0.5 31,996 + HP15_p187g38 0.46 +0.0 31,998 - HP15_p187g38 0.46 +0.5 31,998 - HP15_p187g38 0.46 -0.8 31,998 - HP15_p187g38 0.46 +0.0 32,049 - HP15_p187g38 0.51 -0.4 32,143 + HP15_p187g38 0.60 -0.1 32,143 + HP15_p187g38 0.60 -0.9 32,143 + HP15_p187g38 0.60 -0.6 32,151 - HP15_p187g38 0.61 -0.3 32,151 - HP15_p187g38 0.61 +0.3 32,151 - HP15_p187g38 0.61 +1.6 32,151 - HP15_p187g38 0.61 +0.5 32,180 + HP15_p187g38 0.64 -0.8 32,193 - HP15_p187g38 0.65 -0.0 32,233 - HP15_p187g38 0.69 +0.3 32,249 - HP15_p187g38 0.71 +0.2 32,277 + HP15_p187g38 0.73 +1.1 32,280 - HP15_p187g38 0.74 -1.6 32,285 - HP15_p187g38 0.74 -0.2 32,285 - HP15_p187g38 0.74 +0.5 32,349 + HP15_p187g38 0.80 -0.3 32,349 + HP15_p187g38 0.80 +1.1 32,349 + HP15_p187g38 0.80 -1.1 32,349 + HP15_p187g38 0.80 +0.8 32,349 + HP15_p187g38 0.80 -0.2 32,355 + HP15_p187g38 0.81 +1.9 32,356 + HP15_p187g38 0.81 -0.0 32,357 - HP15_p187g38 0.81 -0.8 32,464 - +0.9 32,476 + -0.1 32,496 - +0.3
Or see this region's nucleotide sequence