Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g32 and HP15_p187g33 are separated by 6 nucleotides HP15_p187g33 and HP15_p187g34 are separated by 437 nucleotides HP15_p187g34 and HP15_p187g35 are separated by 475 nucleotides
HP15_p187g32: HP15_p187g32 - helix-turn-helix- domain containing protein AraC-type, at 24,407 to 25,261
_p187g32
HP15_p187g33: HP15_p187g33 - conserved hypothetical protein, membrane, at 25,268 to 25,681
_p187g33
HP15_p187g34: HP15_p187g34 - uncharacterized conserved protein, HipA-like protein, at 26,119 to 27,468
_p187g34
HP15_p187g35: HP15_p187g35 - hypothetical protein, at 27,944 to 28,771
_p187g35
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.206 kb on - strand at 25.206 kb on - strand at 25.213 kb on - strand at 25.237 kb on + strand at 25.251 kb on + strand at 25.253 kb on + strand at 25.277 kb on + strand at 25.331 kb on + strand, within HP15_p187g33 at 25.408 kb on - strand, within HP15_p187g33 at 25.507 kb on + strand, within HP15_p187g33 at 25.515 kb on - strand, within HP15_p187g33 at 25.522 kb on - strand, within HP15_p187g33 at 25.522 kb on - strand, within HP15_p187g33 at 25.539 kb on + strand, within HP15_p187g33 at 25.546 kb on - strand, within HP15_p187g33 at 25.736 kb on + strand at 25.744 kb on - strand at 25.782 kb on + strand at 25.828 kb on - strand at 25.871 kb on + strand at 25.879 kb on - strand at 25.900 kb on + strand at 25.947 kb on - strand at 25.975 kb on + strand at 25.985 kb on - strand at 26.117 kb on + strand at 26.123 kb on + strand at 26.248 kb on + strand at 26.346 kb on + strand, within HP15_p187g34 at 26.356 kb on + strand, within HP15_p187g34 at 26.400 kb on + strand, within HP15_p187g34 at 26.414 kb on + strand, within HP15_p187g34 at 26.525 kb on + strand, within HP15_p187g34 at 26.591 kb on + strand, within HP15_p187g34 at 26.599 kb on - strand, within HP15_p187g34 at 26.599 kb on - strand, within HP15_p187g34 at 26.745 kb on + strand, within HP15_p187g34 at 26.834 kb on + strand, within HP15_p187g34 at 26.868 kb on + strand, within HP15_p187g34 at 27.019 kb on + strand, within HP15_p187g34 at 27.033 kb on + strand, within HP15_p187g34 at 27.033 kb on + strand, within HP15_p187g34 at 27.045 kb on + strand, within HP15_p187g34 at 27.085 kb on + strand, within HP15_p187g34 at 27.085 kb on + strand, within HP15_p187g34 at 27.085 kb on + strand, within HP15_p187g34 at 27.179 kb on + strand, within HP15_p187g34 at 27.185 kb on + strand, within HP15_p187g34 at 27.192 kb on + strand, within HP15_p187g34 at 27.357 kb on + strand at 27.372 kb on + strand at 27.456 kb on + strand at 27.470 kb on + strand at 27.487 kb on + strand at 27.487 kb on + strand at 27.769 kb on - strand at 27.817 kb on + strand at 27.839 kb on + strand at 27.850 kb on + strand at 27.851 kb on - strand at 27.874 kb on + strand at 27.882 kb on - strand at 27.932 kb on - strand at 27.937 kb on - strand at 28.052 kb on - strand, within HP15_p187g35 at 28.052 kb on - strand, within HP15_p187g35 at 28.117 kb on - strand, within HP15_p187g35 at 28.120 kb on + strand, within HP15_p187g35 at 28.151 kb on - strand, within HP15_p187g35 at 28.165 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.195 kb on - strand, within HP15_p187g35 at 28.195 kb on - strand, within HP15_p187g35 at 28.195 kb on - strand, within HP15_p187g35 at 28.213 kb on + strand, within HP15_p187g35 at 28.245 kb on - strand, within HP15_p187g35 at 28.280 kb on + strand, within HP15_p187g35 at 28.438 kb on + strand, within HP15_p187g35 at 28.442 kb on + strand, within HP15_p187g35 at 28.446 kb on - strand, within HP15_p187g35 at 28.446 kb on - strand, within HP15_p187g35 at 28.446 kb on - strand, within HP15_p187g35 at 28.450 kb on - strand, within HP15_p187g35
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 25,206 - +0.6 25,206 - +0.5 25,213 - +0.4 25,237 + +0.6 25,251 + +1.1 25,253 + +0.8 25,277 + +0.3 25,331 + HP15_p187g33 0.15 -0.2 25,408 - HP15_p187g33 0.34 +1.2 25,507 + HP15_p187g33 0.58 -1.3 25,515 - HP15_p187g33 0.60 +2.1 25,522 - HP15_p187g33 0.61 -1.0 25,522 - HP15_p187g33 0.61 +0.4 25,539 + HP15_p187g33 0.65 -0.1 25,546 - HP15_p187g33 0.67 +1.7 25,736 + +0.8 25,744 - -0.5 25,782 + -0.3 25,828 - +0.0 25,871 + +0.1 25,879 - +0.3 25,900 + +0.3 25,947 - -1.1 25,975 + -0.8 25,985 - -0.5 26,117 + -1.1 26,123 + -0.9 26,248 + -0.5 26,346 + HP15_p187g34 0.17 -1.7 26,356 + HP15_p187g34 0.18 +1.3 26,400 + HP15_p187g34 0.21 -0.6 26,414 + HP15_p187g34 0.22 +0.3 26,525 + HP15_p187g34 0.30 +0.5 26,591 + HP15_p187g34 0.35 +0.9 26,599 - HP15_p187g34 0.36 -0.9 26,599 - HP15_p187g34 0.36 +0.1 26,745 + HP15_p187g34 0.46 +0.0 26,834 + HP15_p187g34 0.53 -0.0 26,868 + HP15_p187g34 0.55 -0.7 27,019 + HP15_p187g34 0.67 +0.1 27,033 + HP15_p187g34 0.68 +2.5 27,033 + HP15_p187g34 0.68 +0.1 27,045 + HP15_p187g34 0.69 +0.3 27,085 + HP15_p187g34 0.72 +1.0 27,085 + HP15_p187g34 0.72 +0.6 27,085 + HP15_p187g34 0.72 +0.5 27,179 + HP15_p187g34 0.79 +1.0 27,185 + HP15_p187g34 0.79 -0.1 27,192 + HP15_p187g34 0.79 +0.5 27,357 + -0.3 27,372 + +1.4 27,456 + -0.8 27,470 + +0.8 27,487 + +0.5 27,487 + -1.3 27,769 - -0.5 27,817 + +0.5 27,839 + +0.6 27,850 + -0.4 27,851 - -0.5 27,874 + +1.2 27,882 - +0.9 27,932 - +0.0 27,937 - +1.0 28,052 - HP15_p187g35 0.13 +0.8 28,052 - HP15_p187g35 0.13 -0.1 28,117 - HP15_p187g35 0.21 -0.6 28,120 + HP15_p187g35 0.21 +0.0 28,151 - HP15_p187g35 0.25 -0.8 28,165 + HP15_p187g35 0.27 -1.8 28,187 + HP15_p187g35 0.29 -0.4 28,187 + HP15_p187g35 0.29 -0.5 28,187 + HP15_p187g35 0.29 +1.2 28,187 + HP15_p187g35 0.29 +0.1 28,195 - HP15_p187g35 0.30 -0.9 28,195 - HP15_p187g35 0.30 +0.3 28,195 - HP15_p187g35 0.30 +0.3 28,213 + HP15_p187g35 0.32 +1.0 28,245 - HP15_p187g35 0.36 +0.8 28,280 + HP15_p187g35 0.41 +1.0 28,438 + HP15_p187g35 0.60 -0.4 28,442 + HP15_p187g35 0.60 -0.3 28,446 - HP15_p187g35 0.61 -0.9 28,446 - HP15_p187g35 0.61 -2.0 28,446 - HP15_p187g35 0.61 -0.0 28,450 - HP15_p187g35 0.61 +1.2
Or see this region's nucleotide sequence