Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_411 and HP15_412 are separated by 1 nucleotides HP15_412 and HP15_413 are separated by 17 nucleotides HP15_413 and HP15_414 are separated by 1 nucleotides HP15_414 and HP15_415 overlap by 4 nucleotides
HP15_411: HP15_411 - MshA biogenesis protein, MshJ-like protein, at 406,650 to 407,339
_411
HP15_412: HP15_412 - conserved hypothetical protein, secreted, at 407,341 to 407,691
_412
HP15_413: HP15_413 - pilus (MSHA type) biogenesis protein MshL, at 407,709 to 409,422
_413
HP15_414: HP15_414 - general secretion pathway protein, ATPase, at 409,424 to 410,263
_414
HP15_415: HP15_415 - TPR repeat protein, at 410,260 to 411,402
_415
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 406.747 kb on + strand, within HP15_411 at 406.840 kb on - strand, within HP15_411 at 406.977 kb on + strand, within HP15_411 at 406.978 kb on - strand, within HP15_411 at 407.012 kb on + strand, within HP15_411 at 407.020 kb on - strand, within HP15_411 at 407.126 kb on + strand, within HP15_411 at 407.256 kb on - strand, within HP15_411 at 407.258 kb on - strand, within HP15_411 at 407.413 kb on + strand, within HP15_412 at 407.421 kb on - strand, within HP15_412 at 407.463 kb on + strand, within HP15_412 at 407.551 kb on + strand, within HP15_412 at 407.569 kb on + strand, within HP15_412 at 407.673 kb on + strand at 407.745 kb on + strand at 407.758 kb on - strand at 407.833 kb on + strand at 408.069 kb on - strand, within HP15_413 at 408.265 kb on - strand, within HP15_413 at 408.305 kb on + strand, within HP15_413 at 408.342 kb on - strand, within HP15_413 at 408.522 kb on + strand, within HP15_413 at 408.930 kb on - strand, within HP15_413 at 408.946 kb on - strand, within HP15_413 at 409.007 kb on + strand, within HP15_413 at 409.149 kb on - strand, within HP15_413 at 409.168 kb on + strand, within HP15_413 at 409.387 kb on - strand at 409.525 kb on + strand, within HP15_414 at 409.554 kb on - strand, within HP15_414 at 409.670 kb on - strand, within HP15_414 at 409.781 kb on - strand, within HP15_414 at 409.824 kb on - strand, within HP15_414 at 409.825 kb on - strand, within HP15_414 at 409.899 kb on - strand, within HP15_414 at 409.915 kb on + strand, within HP15_414 at 410.058 kb on + strand, within HP15_414 at 410.159 kb on + strand, within HP15_414 at 410.235 kb on + strand at 410.288 kb on + strand at 410.288 kb on + strand at 410.307 kb on - strand at 410.401 kb on + strand, within HP15_415
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 406,747 + HP15_411 0.14 +1.0 406,840 - HP15_411 0.28 +0.4 406,977 + HP15_411 0.47 +0.8 406,978 - HP15_411 0.48 +1.2 407,012 + HP15_411 0.52 +1.1 407,020 - HP15_411 0.54 +0.9 407,126 + HP15_411 0.69 +1.3 407,256 - HP15_411 0.88 +0.1 407,258 - HP15_411 0.88 +0.5 407,413 + HP15_412 0.21 +4.0 407,421 - HP15_412 0.23 +1.0 407,463 + HP15_412 0.35 +1.3 407,551 + HP15_412 0.60 +2.8 407,569 + HP15_412 0.65 +0.4 407,673 + -2.6 407,745 + +1.1 407,758 - +2.5 407,833 + +1.5 408,069 - HP15_413 0.21 -0.4 408,265 - HP15_413 0.32 +1.1 408,305 + HP15_413 0.35 +1.4 408,342 - HP15_413 0.37 +1.7 408,522 + HP15_413 0.47 +2.3 408,930 - HP15_413 0.71 +2.0 408,946 - HP15_413 0.72 +1.0 409,007 + HP15_413 0.76 +1.5 409,149 - HP15_413 0.84 +2.0 409,168 + HP15_413 0.85 +2.1 409,387 - +2.2 409,525 + HP15_414 0.12 +0.6 409,554 - HP15_414 0.15 +1.3 409,670 - HP15_414 0.29 +1.0 409,781 - HP15_414 0.42 +0.2 409,824 - HP15_414 0.48 -0.5 409,825 - HP15_414 0.48 +1.5 409,899 - HP15_414 0.57 -0.1 409,915 + HP15_414 0.58 -0.1 410,058 + HP15_414 0.75 +0.7 410,159 + HP15_414 0.88 +1.3 410,235 + +1.2 410,288 + +1.4 410,288 + +2.1 410,307 - +0.8 410,401 + HP15_415 0.12 +0.6
Or see this region's nucleotide sequence