Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_346 and HP15_347 are separated by 439 nucleotides HP15_347 and HP15_348 are separated by 15 nucleotides HP15_348 and HP15_349 overlap by 4 nucleotides
HP15_346: HP15_346 - triacylglycerol lipase, at 340,803 to 341,606
_346
HP15_347: HP15_347 - glutamate-1-semialdehyde 2,1-aminomutase, at 342,046 to 343,326
_347
HP15_348: HP15_348 - thiamine-phosphate pyrophosphorylase, at 343,342 to 344,001
_348
HP15_349: HP15_349 - phosphomethylpyrimidine kinase, at 343,998 to 344,651
_349
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1 at 341.118 kb on + strand, within HP15_346 at 341.160 kb on + strand, within HP15_346 at 341.160 kb on + strand, within HP15_346 at 341.163 kb on - strand, within HP15_346 at 341.168 kb on - strand, within HP15_346 at 341.175 kb on - strand, within HP15_346 at 341.195 kb on + strand, within HP15_346 at 341.201 kb on + strand, within HP15_346 at 341.336 kb on + strand, within HP15_346 at 341.426 kb on + strand, within HP15_346 at 341.440 kb on + strand, within HP15_346 at 341.506 kb on - strand, within HP15_346 at 341.542 kb on - strand at 341.639 kb on + strand at 341.647 kb on - strand at 341.677 kb on - strand at 341.679 kb on + strand at 341.687 kb on - strand at 341.818 kb on - strand at 341.818 kb on - strand at 341.920 kb on + strand at 341.958 kb on - strand at 341.985 kb on + strand at 342.020 kb on - strand at 342.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 341,118 + HP15_346 0.39 +1.0 341,160 + HP15_346 0.44 +1.1 341,160 + HP15_346 0.44 -0.4 341,163 - HP15_346 0.45 -0.0 341,168 - HP15_346 0.45 -0.5 341,175 - HP15_346 0.46 -1.3 341,195 + HP15_346 0.49 +0.5 341,201 + HP15_346 0.50 -0.9 341,336 + HP15_346 0.66 +0.1 341,426 + HP15_346 0.77 +0.6 341,440 + HP15_346 0.79 -0.5 341,506 - HP15_346 0.87 -0.7 341,542 - -0.3 341,639 + -0.5 341,647 - +0.6 341,677 - +0.7 341,679 + -1.9 341,687 - +0.2 341,818 - +0.6 341,818 - +0.6 341,920 + +1.7 341,958 - -0.3 341,985 + -1.2 342,020 - -0.2 342,035 - +0.8
Or see this region's nucleotide sequence