Strain Fitness in Marinobacter adhaerens HP15 around HP15_3323

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3321 and HP15_3322 are separated by 228 nucleotidesHP15_3322 and HP15_3323 are separated by 11 nucleotidesHP15_3323 and HP15_3324 are separated by 64 nucleotidesHP15_3324 and HP15_3325 are separated by 65 nucleotides HP15_3321: HP15_3321 - DNA repair protein RadC-like protein, at 3,483,263 to 3,483,937 _3321 HP15_3322: HP15_3322 - ribosomal protein L28, at 3,484,166 to 3,484,402 _3322 HP15_3323: HP15_3323 - ribosomal protein L33, at 3,484,414 to 3,484,569 _3323 HP15_3324: HP15_3324 - endonuclease/exonuclease/phosphatase, at 3,484,634 to 3,485,494 _3324 HP15_3325: HP15_3325 - DSBA oxidoreductase, at 3,485,560 to 3,486,195 _3325 Position (kb) 3484 3485Strain fitness (log2 ratio) -2 -1 0 1at 3483.463 kb on + strand, within HP15_3321at 3483.479 kb on + strand, within HP15_3321at 3483.480 kb on - strand, within HP15_3321at 3483.674 kb on - strand, within HP15_3321at 3483.688 kb on + strand, within HP15_3321at 3483.787 kb on + strand, within HP15_3321at 3483.931 kb on + strandat 3484.640 kb on - strandat 3484.685 kb on - strandat 3484.731 kb on - strand, within HP15_3324at 3484.800 kb on + strand, within HP15_3324at 3484.920 kb on - strand, within HP15_3324at 3485.070 kb on - strand, within HP15_3324at 3485.206 kb on - strand, within HP15_3324at 3485.389 kb on - strand, within HP15_3324at 3485.461 kb on - strandat 3485.525 kb on + strandat 3485.535 kb on + strandat 3485.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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3,483,463 + HP15_3321 0.30 +0.9
3,483,479 + HP15_3321 0.32 -2.2
3,483,480 - HP15_3321 0.32 -0.6
3,483,674 - HP15_3321 0.61 +0.0
3,483,688 + HP15_3321 0.63 +0.1
3,483,787 + HP15_3321 0.78 +0.5
3,483,931 + -1.0
3,484,640 - -0.2
3,484,685 - -0.2
3,484,731 - HP15_3324 0.11 -0.6
3,484,800 + HP15_3324 0.19 +1.7
3,484,920 - HP15_3324 0.33 -0.3
3,485,070 - HP15_3324 0.51 -0.6
3,485,206 - HP15_3324 0.66 +1.0
3,485,389 - HP15_3324 0.88 -0.4
3,485,461 - +1.0
3,485,525 + +0.0
3,485,535 + -0.1
3,485,565 - +0.6

Or see this region's nucleotide sequence