Strain Fitness in Marinobacter adhaerens HP15 around HP15_3283

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3282 and HP15_3283 overlap by 4 nucleotidesHP15_3283 and HP15_3284 are separated by 25 nucleotidesHP15_3284 and HP15_3285 overlap by 4 nucleotides HP15_3282: HP15_3282 - aminoglycoside phosphotransferase, at 3,440,920 to 3,441,978 _3282 HP15_3283: HP15_3283 - nucleotidyltransferase family protein, at 3,441,975 to 3,442,673 _3283 HP15_3284: HP15_3284 - DnaJ-like membrane chaperone protein, at 3,442,699 to 3,443,421 _3284 HP15_3285: HP15_3285 - conserved hypothetical protein, secreted, at 3,443,418 to 3,444,374 _3285 Position (kb) 3441 3442 3443Strain fitness (log2 ratio) -1 0 1 2at 3441.279 kb on - strand, within HP15_3282at 3441.318 kb on - strand, within HP15_3282at 3441.689 kb on + strand, within HP15_3282at 3441.700 kb on + strand, within HP15_3282at 3441.747 kb on + strand, within HP15_3282at 3442.750 kb on - strandat 3442.881 kb on + strand, within HP15_3284at 3442.881 kb on + strand, within HP15_3284at 3442.889 kb on - strand, within HP15_3284at 3443.055 kb on + strand, within HP15_3284at 3443.056 kb on - strand, within HP15_3284at 3443.076 kb on + strand, within HP15_3284at 3443.167 kb on + strand, within HP15_3284at 3443.174 kb on - strand, within HP15_3284at 3443.320 kb on + strand, within HP15_3284at 3443.339 kb on + strand, within HP15_3284at 3443.521 kb on - strand, within HP15_3285at 3443.598 kb on - strand, within HP15_3285at 3443.664 kb on - strand, within HP15_3285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
3,441,279 - HP15_3282 0.34 -0.7
3,441,318 - HP15_3282 0.38 +2.1
3,441,689 + HP15_3282 0.73 +1.5
3,441,700 + HP15_3282 0.74 +0.1
3,441,747 + HP15_3282 0.78 -0.4
3,442,750 - -0.1
3,442,881 + HP15_3284 0.25 +0.9
3,442,881 + HP15_3284 0.25 +0.7
3,442,889 - HP15_3284 0.26 -0.7
3,443,055 + HP15_3284 0.49 +0.1
3,443,056 - HP15_3284 0.49 +0.5
3,443,076 + HP15_3284 0.52 -0.3
3,443,167 + HP15_3284 0.65 +1.4
3,443,174 - HP15_3284 0.66 +1.2
3,443,320 + HP15_3284 0.86 -0.8
3,443,339 + HP15_3284 0.89 -0.2
3,443,521 - HP15_3285 0.11 -0.5
3,443,598 - HP15_3285 0.19 +0.6
3,443,664 - HP15_3285 0.26 -0.4

Or see this region's nucleotide sequence