Strain Fitness in Marinobacter adhaerens HP15 around HP15_3276

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3274 and HP15_3275 are separated by 66 nucleotidesHP15_3275 and HP15_3276 are separated by 25 nucleotidesHP15_3276 and HP15_3277 are separated by 43 nucleotidesHP15_3277 and HP15_3278 overlap by 8 nucleotides HP15_3274: HP15_3274 - thiazole synthase, at 3,432,815 to 3,433,624 _3274 HP15_3275: HP15_3275 - ThiS, thiamine-biosynthesis, at 3,433,691 to 3,433,891 _3275 HP15_3276: HP15_3276 - membrane protein containing DUF423, at 3,433,917 to 3,434,276 _3276 HP15_3277: HP15_3277 - diadenosine tetraphosphatase, at 3,434,320 to 3,435,120 _3277 HP15_3278: HP15_3278 - dimethyladenosine transferase, at 3,435,113 to 3,435,943 _3278 Position (kb) 3433 3434 3435Strain fitness (log2 ratio) -2 -1 0 1at 3433.620 kb on + strandat 3433.628 kb on - strandat 3433.628 kb on - strandat 3433.661 kb on - strandat 3433.683 kb on - strandat 3433.687 kb on + strandat 3433.689 kb on - strandat 3433.950 kb on - strandat 3434.277 kb on - strandat 3434.577 kb on - strand, within HP15_3277at 3434.727 kb on - strand, within HP15_3277at 3435.058 kb on + strandat 3435.245 kb on - strand, within HP15_3278at 3435.266 kb on + strand, within HP15_3278

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
3,433,620 + -2.0
3,433,628 - +0.5
3,433,628 - +0.5
3,433,661 - -0.2
3,433,683 - +1.3
3,433,687 + +0.4
3,433,689 - +0.3
3,433,950 - -0.1
3,434,277 - +0.3
3,434,577 - HP15_3277 0.32 -0.8
3,434,727 - HP15_3277 0.51 -1.0
3,435,058 + -1.6
3,435,245 - HP15_3278 0.16 +1.5
3,435,266 + HP15_3278 0.18 -1.6

Or see this region's nucleotide sequence