Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3195 and HP15_3196 are separated by 88 nucleotides HP15_3196 and HP15_3197 are separated by 11 nucleotides HP15_3197 and HP15_3198 overlap by 4 nucleotides HP15_3198 and HP15_3199 overlap by 4 nucleotides HP15_3199 and HP15_3200 are separated by 13 nucleotides
HP15_3195: HP15_3195 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 3,349,870 to 3,350,199
_3195
HP15_3196: HP15_3196 - twin-arginine translocation protein TatA/E, at 3,350,288 to 3,350,527
_3196
HP15_3197: HP15_3197 - twin-arginine translocation subgoup, at 3,350,539 to 3,351,012
_3197
HP15_3198: HP15_3198 - Sec-independent protein translocase, TatC subunit, at 3,351,009 to 3,351,794
_3198
HP15_3199: HP15_3199 - ribosomal RNA small subunit methyltransferase E, at 3,351,791 to 3,352,510
_3199
HP15_3200: HP15_3200 - membrane protein containing DUF808, at 3,352,524 to 3,353,438
_3200
Position (kb) 3351
3352 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3350.056 kb on - strand, within HP15_3195 at 3350.201 kb on + strand at 3350.523 kb on + strand at 3350.876 kb on + strand, within HP15_3197 at 3352.616 kb on + strand, within HP15_3200 at 3352.644 kb on + strand, within HP15_3200 at 3352.662 kb on + strand, within HP15_3200 at 3352.737 kb on + strand, within HP15_3200
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 3,350,056 - HP15_3195 0.56 -4.5 3,350,201 + -1.7 3,350,523 + -0.8 3,350,876 + HP15_3197 0.71 +0.1 3,352,616 + HP15_3200 0.10 +1.1 3,352,644 + HP15_3200 0.13 -0.6 3,352,662 + HP15_3200 0.15 -0.1 3,352,737 + HP15_3200 0.23 +0.5
Or see this region's nucleotide sequence