Strain Fitness in Marinobacter adhaerens HP15 around HP15_315

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_314 and HP15_tRNA2 are separated by 199 nucleotidesHP15_tRNA2 and HP15_315 are separated by 96 nucleotidesHP15_315 and HP15_316 are separated by 133 nucleotides HP15_314: HP15_314 - membrane protein involved in aromatic hydrocarbon degradation, at 309,643 to 310,980 _314 HP15_tRNA2: HP15_tRNA2 - tRNA-Met, at 311,180 to 311,256 _tRNA2 HP15_315: HP15_315 - RNA polymerase, sigma 70 subunit, RpoD, at 311,353 to 313,200 _315 HP15_316: HP15_316 - protein containing DNA primase, DnaG/TOPRIM, at 313,334 to 315,061 _316 Position (kb) 311 312 313 314Strain fitness (log2 ratio) -1 0 1at 310.712 kb on + strand, within HP15_314at 310.777 kb on + strand, within HP15_314at 310.795 kb on - strand, within HP15_314at 310.916 kb on - strandat 310.996 kb on - strandat 311.310 kb on + strandat 313.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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310,712 + HP15_314 0.80 -0.3
310,777 + HP15_314 0.85 +1.3
310,795 - HP15_314 0.86 -0.1
310,916 - +0.9
310,996 - +0.7
311,310 + -0.9
313,328 - +0.4

Or see this region's nucleotide sequence