Strain Fitness in Marinobacter adhaerens HP15 around HP15_2630

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2628 and HP15_2629 are separated by 177 nucleotidesHP15_2629 and HP15_2630 are separated by 232 nucleotidesHP15_2630 and HP15_2631 overlap by 4 nucleotides HP15_2628: HP15_2628 - ABC transporter ATP-binding protein-like protein, at 2,779,102 to 2,780,688 _2628 HP15_2629: HP15_2629 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,780,866 to 2,781,150 _2629 HP15_2630: HP15_2630 - succinyl-CoA synthetase, beta subunit, at 2,781,383 to 2,782,090 _2630 HP15_2631: HP15_2631 - Xaa-Pro aminopeptidase, at 2,782,087 to 2,783,268 _2631 Position (kb) 2781 2782 2783Strain fitness (log2 ratio) -2 -1 0 1 2at 2780.444 kb on - strand, within HP15_2628at 2780.472 kb on - strand, within HP15_2628at 2780.518 kb on - strand, within HP15_2628at 2780.590 kb on + strandat 2780.754 kb on - strandat 2780.766 kb on + strandat 2780.802 kb on + strandat 2780.812 kb on + strandat 2780.848 kb on - strandat 2780.868 kb on + strandat 2781.013 kb on + strand, within HP15_2629at 2781.031 kb on - strand, within HP15_2629at 2781.124 kb on - strandat 2781.276 kb on - strandat 2781.278 kb on + strandat 2781.278 kb on + strandat 2781.298 kb on - strandat 2781.299 kb on + strandat 2781.408 kb on + strandat 2781.502 kb on + strand, within HP15_2630at 2781.732 kb on + strand, within HP15_2630at 2781.756 kb on + strand, within HP15_2630at 2781.813 kb on + strand, within HP15_2630at 2781.813 kb on + strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.850 kb on - strand, within HP15_2630at 2781.883 kb on - strand, within HP15_2630at 2781.941 kb on + strand, within HP15_2630at 2782.232 kb on + strand, within HP15_2631at 2782.246 kb on + strand, within HP15_2631at 2782.282 kb on - strand, within HP15_2631at 2782.367 kb on + strand, within HP15_2631at 2782.499 kb on + strand, within HP15_2631at 2782.499 kb on + strand, within HP15_2631at 2782.515 kb on - strand, within HP15_2631at 2782.563 kb on - strand, within HP15_2631at 2782.564 kb on - strand, within HP15_2631at 2782.564 kb on - strand, within HP15_2631at 2782.586 kb on - strand, within HP15_2631at 2782.613 kb on - strand, within HP15_2631at 2782.895 kb on - strand, within HP15_2631at 2782.903 kb on + strand, within HP15_2631at 2782.970 kb on + strand, within HP15_2631at 2782.999 kb on - strand, within HP15_2631

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
2,780,444 - HP15_2628 0.85 -0.8
2,780,472 - HP15_2628 0.86 +1.0
2,780,518 - HP15_2628 0.89 -1.7
2,780,590 + -0.2
2,780,754 - +0.4
2,780,766 + -0.4
2,780,802 + +0.6
2,780,812 + -0.1
2,780,848 - -0.9
2,780,868 + -0.8
2,781,013 + HP15_2629 0.52 -0.2
2,781,031 - HP15_2629 0.58 -0.2
2,781,124 - -0.7
2,781,276 - +0.2
2,781,278 + +0.2
2,781,278 + +1.4
2,781,298 - +0.5
2,781,299 + -2.0
2,781,408 + -0.2
2,781,502 + HP15_2630 0.17 -0.4
2,781,732 + HP15_2630 0.49 +1.3
2,781,756 + HP15_2630 0.53 +0.6
2,781,813 + HP15_2630 0.61 -0.4
2,781,813 + HP15_2630 0.61 -0.6
2,781,821 - HP15_2630 0.62 +0.9
2,781,821 - HP15_2630 0.62 -0.3
2,781,821 - HP15_2630 0.62 +0.0
2,781,850 - HP15_2630 0.66 -0.4
2,781,883 - HP15_2630 0.71 -0.1
2,781,941 + HP15_2630 0.79 -2.4
2,782,232 + HP15_2631 0.12 -1.6
2,782,246 + HP15_2631 0.13 -1.4
2,782,282 - HP15_2631 0.16 -0.6
2,782,367 + HP15_2631 0.24 -0.1
2,782,499 + HP15_2631 0.35 -0.6
2,782,499 + HP15_2631 0.35 -1.0
2,782,515 - HP15_2631 0.36 -0.2
2,782,563 - HP15_2631 0.40 -0.5
2,782,564 - HP15_2631 0.40 -1.4
2,782,564 - HP15_2631 0.40 +0.1
2,782,586 - HP15_2631 0.42 -0.5
2,782,613 - HP15_2631 0.45 -0.7
2,782,895 - HP15_2631 0.68 +1.0
2,782,903 + HP15_2631 0.69 +0.2
2,782,970 + HP15_2631 0.75 +0.1
2,782,999 - HP15_2631 0.77 +2.4

Or see this region's nucleotide sequence