Strain Fitness in Marinobacter adhaerens HP15 around HP15_2511

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2510 and HP15_2511 are separated by 174 nucleotidesHP15_2511 and HP15_2512 are separated by 15 nucleotidesHP15_2512 and HP15_2513 are separated by 7 nucleotides HP15_2510: HP15_2510 - flagellar motor protein MotA, at 2,650,086 to 2,650,937 _2510 HP15_2511: HP15_2511 - phosphatidylserine decarboxylase proenzyme, at 2,651,112 to 2,651,966 _2511 HP15_2512: HP15_2512 - tRNA synthetase, class II (D, K and N), at 2,651,982 to 2,652,950 _2512 HP15_2513: HP15_2513 - translation elongation factor P, at 2,652,958 to 2,653,488 _2513 Position (kb) 2651 2652Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2650.221 kb on + strand, within HP15_2510at 2650.284 kb on + strand, within HP15_2510at 2650.325 kb on - strand, within HP15_2510at 2650.468 kb on - strand, within HP15_2510at 2650.556 kb on - strand, within HP15_2510at 2650.602 kb on - strand, within HP15_2510at 2650.687 kb on + strand, within HP15_2510at 2650.809 kb on + strand, within HP15_2510at 2650.809 kb on + strand, within HP15_2510at 2650.817 kb on - strand, within HP15_2510at 2650.880 kb on + strandat 2650.905 kb on - strandat 2650.937 kb on - strandat 2651.031 kb on - strandat 2652.003 kb on + strandat 2652.211 kb on + strand, within HP15_2512at 2652.225 kb on - strand, within HP15_2512at 2652.345 kb on - strand, within HP15_2512at 2652.345 kb on - strand, within HP15_2512at 2652.437 kb on + strand, within HP15_2512at 2652.569 kb on + strand, within HP15_2512at 2652.609 kb on - strand, within HP15_2512at 2652.676 kb on - strand, within HP15_2512at 2652.735 kb on + strand, within HP15_2512at 2652.824 kb on + strand, within HP15_2512at 2652.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,650,221 + HP15_2510 0.16 +0.5
2,650,284 + HP15_2510 0.23 +0.1
2,650,325 - HP15_2510 0.28 +0.9
2,650,468 - HP15_2510 0.45 +0.1
2,650,556 - HP15_2510 0.55 -0.8
2,650,602 - HP15_2510 0.61 -0.4
2,650,687 + HP15_2510 0.71 -0.4
2,650,809 + HP15_2510 0.85 +0.2
2,650,809 + HP15_2510 0.85 +1.1
2,650,817 - HP15_2510 0.86 -0.7
2,650,880 + +0.1
2,650,905 - +0.3
2,650,937 - +2.9
2,651,031 - -0.5
2,652,003 + -1.0
2,652,211 + HP15_2512 0.24 +2.1
2,652,225 - HP15_2512 0.25 +0.4
2,652,345 - HP15_2512 0.37 -0.6
2,652,345 - HP15_2512 0.37 -0.5
2,652,437 + HP15_2512 0.47 -0.7
2,652,569 + HP15_2512 0.61 -2.1
2,652,609 - HP15_2512 0.65 -0.0
2,652,676 - HP15_2512 0.72 +1.3
2,652,735 + HP15_2512 0.78 +0.2
2,652,824 + HP15_2512 0.87 +1.4
2,652,953 - -0.1

Or see this region's nucleotide sequence