Strain Fitness in Marinobacter adhaerens HP15 around HP15_2503

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2502 and HP15_2503 are separated by 38 nucleotidesHP15_2503 and HP15_2504 are separated by 5 nucleotides HP15_2502: HP15_2502 - N-acetylmuramoyl-L-alanine amidase-like protein, at 2,642,563 to 2,643,921 _2502 HP15_2503: HP15_2503 - protein containing uncharacterized protein family UPF0079, ATPase bacteria domains, at 2,643,960 to 2,644,448 _2503 HP15_2504: HP15_2504 - carbohydrate kinase, YjeF related protein, at 2,644,454 to 2,645,953 _2504 Position (kb) 2643 2644 2645Strain fitness (log2 ratio) -2 -1 0 1 2at 2643.906 kb on + strandat 2644.452 kb on + strandat 2644.551 kb on - strandat 2644.625 kb on - strand, within HP15_2504at 2644.877 kb on + strand, within HP15_2504at 2645.138 kb on + strand, within HP15_2504at 2645.177 kb on - strand, within HP15_2504at 2645.271 kb on - strand, within HP15_2504at 2645.384 kb on + strand, within HP15_2504at 2645.387 kb on - strand, within HP15_2504at 2645.409 kb on - strand, within HP15_2504at 2645.424 kb on - strand, within HP15_2504at 2645.444 kb on + strand, within HP15_2504

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,643,906 + -1.1
2,644,452 + -0.6
2,644,551 - -1.2
2,644,625 - HP15_2504 0.11 +1.2
2,644,877 + HP15_2504 0.28 +0.8
2,645,138 + HP15_2504 0.46 +2.2
2,645,177 - HP15_2504 0.48 +1.1
2,645,271 - HP15_2504 0.54 -1.8
2,645,384 + HP15_2504 0.62 +0.1
2,645,387 - HP15_2504 0.62 -0.1
2,645,409 - HP15_2504 0.64 -1.3
2,645,424 - HP15_2504 0.65 -0.5
2,645,444 + HP15_2504 0.66 +0.5

Or see this region's nucleotide sequence