Strain Fitness in Marinobacter adhaerens HP15 around HP15_2430

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2428 and HP15_2429 are separated by 53 nucleotidesHP15_2429 and HP15_2430 are separated by 40 nucleotidesHP15_2430 and HP15_2431 are separated by 28 nucleotidesHP15_2431 and HP15_2432 are separated by 104 nucleotidesHP15_2432 and HP15_2433 overlap by 4 nucleotides HP15_2428: HP15_2428 - histidinol dehydrogenase, at 2,569,411 to 2,570,715 _2428 HP15_2429: HP15_2429 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 2,570,769 to 2,571,410 _2429 HP15_2430: HP15_2430 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,571,451 to 2,572,713 _2430 HP15_2431: HP15_2431 - transcriptional regulator, BolA superfamily protein, at 2,572,742 to 2,572,984 _2431 HP15_2432: HP15_2432 - NTP binding protein (contains STAS domain), at 2,573,089 to 2,573,421 _2432 HP15_2433: HP15_2433 - toluene tolerance family protein, at 2,573,418 to 2,574,107 _2433 Position (kb) 2571 2572 2573Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2570.728 kb on + strandat 2570.773 kb on - strandat 2570.981 kb on + strand, within HP15_2429at 2571.018 kb on + strand, within HP15_2429at 2571.018 kb on + strand, within HP15_2429at 2571.018 kb on + strand, within HP15_2429at 2571.026 kb on - strand, within HP15_2429at 2571.160 kb on - strand, within HP15_2429at 2571.200 kb on + strand, within HP15_2429at 2571.214 kb on + strand, within HP15_2429at 2571.214 kb on - strand, within HP15_2429at 2573.056 kb on - strandat 2573.247 kb on + strand, within HP15_2432at 2573.247 kb on + strand, within HP15_2432at 2573.247 kb on + strand, within HP15_2432at 2573.262 kb on - strand, within HP15_2432at 2573.452 kb on - strandat 2573.601 kb on + strand, within HP15_2433at 2573.607 kb on - strand, within HP15_2433at 2573.607 kb on - strand, within HP15_2433

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,570,728 + -0.3
2,570,773 - -1.2
2,570,981 + HP15_2429 0.33 -3.6
2,571,018 + HP15_2429 0.39 -2.7
2,571,018 + HP15_2429 0.39 -3.1
2,571,018 + HP15_2429 0.39 -4.4
2,571,026 - HP15_2429 0.40 -3.5
2,571,160 - HP15_2429 0.61 -3.4
2,571,200 + HP15_2429 0.67 -2.1
2,571,214 + HP15_2429 0.69 -2.4
2,571,214 - HP15_2429 0.69 -5.2
2,573,056 - -0.9
2,573,247 + HP15_2432 0.47 -1.3
2,573,247 + HP15_2432 0.47 -0.4
2,573,247 + HP15_2432 0.47 +1.0
2,573,262 - HP15_2432 0.52 +0.6
2,573,452 - +0.5
2,573,601 + HP15_2433 0.27 -0.0
2,573,607 - HP15_2433 0.27 +1.3
2,573,607 - HP15_2433 0.27 +0.6

Or see this region's nucleotide sequence