Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2428 and HP15_2429 are separated by 53 nucleotides HP15_2429 and HP15_2430 are separated by 40 nucleotides HP15_2430 and HP15_2431 are separated by 28 nucleotides HP15_2431 and HP15_2432 are separated by 104 nucleotides HP15_2432 and HP15_2433 overlap by 4 nucleotides
HP15_2428: HP15_2428 - histidinol dehydrogenase, at 2,569,411 to 2,570,715
_2428
HP15_2429: HP15_2429 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) , at 2,570,769 to 2,571,410
_2429
HP15_2430: HP15_2430 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,571,451 to 2,572,713
_2430
HP15_2431: HP15_2431 - transcriptional regulator, BolA superfamily protein, at 2,572,742 to 2,572,984
_2431
HP15_2432: HP15_2432 - NTP binding protein (contains STAS domain), at 2,573,089 to 2,573,421
_2432
HP15_2433: HP15_2433 - toluene tolerance family protein, at 2,573,418 to 2,574,107
_2433
Position (kb)
2571
2572
2573 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2570.728 kb on + strand at 2570.773 kb on - strand at 2570.981 kb on + strand, within HP15_2429 at 2571.018 kb on + strand, within HP15_2429 at 2571.018 kb on + strand, within HP15_2429 at 2571.018 kb on + strand, within HP15_2429 at 2571.026 kb on - strand, within HP15_2429 at 2571.160 kb on - strand, within HP15_2429 at 2571.200 kb on + strand, within HP15_2429 at 2571.214 kb on + strand, within HP15_2429 at 2571.214 kb on - strand, within HP15_2429 at 2573.056 kb on - strand at 2573.247 kb on + strand, within HP15_2432 at 2573.247 kb on + strand, within HP15_2432 at 2573.247 kb on + strand, within HP15_2432 at 2573.262 kb on - strand, within HP15_2432 at 2573.452 kb on - strand at 2573.601 kb on + strand, within HP15_2433 at 2573.607 kb on - strand, within HP15_2433 at 2573.607 kb on - strand, within HP15_2433
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 2,570,728 + -0.3 2,570,773 - -1.2 2,570,981 + HP15_2429 0.33 -3.6 2,571,018 + HP15_2429 0.39 -2.7 2,571,018 + HP15_2429 0.39 -3.1 2,571,018 + HP15_2429 0.39 -4.4 2,571,026 - HP15_2429 0.40 -3.5 2,571,160 - HP15_2429 0.61 -3.4 2,571,200 + HP15_2429 0.67 -2.1 2,571,214 + HP15_2429 0.69 -2.4 2,571,214 - HP15_2429 0.69 -5.2 2,573,056 - -0.9 2,573,247 + HP15_2432 0.47 -1.3 2,573,247 + HP15_2432 0.47 -0.4 2,573,247 + HP15_2432 0.47 +1.0 2,573,262 - HP15_2432 0.52 +0.6 2,573,452 - +0.5 2,573,601 + HP15_2433 0.27 -0.0 2,573,607 - HP15_2433 0.27 +1.3 2,573,607 - HP15_2433 0.27 +0.6
Or see this region's nucleotide sequence