Strain Fitness in Marinobacter adhaerens HP15 around HP15_2387

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2385 and HP15_2386 are separated by 28 nucleotidesHP15_2386 and HP15_2387 are separated by 8 nucleotidesHP15_2387 and HP15_2388 are separated by 1 nucleotidesHP15_2388 and HP15_2389 are separated by 482 nucleotides HP15_2385: HP15_2385 - UDP-glucose 6-dehydrogenase, at 2,515,051 to 2,516,223 _2385 HP15_2386: HP15_2386 - UDP-glucose 4-epimerase, at 2,516,252 to 2,517,208 _2386 HP15_2387: HP15_2387 - dTDP-glucose 4-6-dehydratase, at 2,517,217 to 2,518,164 _2387 HP15_2388: HP15_2388 - glycosyl transferase-like protein, at 2,518,166 to 2,518,474 _2388 HP15_2389: HP15_2389 - capsule polysaccharide biosynthetic protein, at 2,518,957 to 2,520,489 _2389 Position (kb) 2517 2518 2519Strain fitness (log2 ratio) -3 -2 -1 0 1at 2516.402 kb on + strand, within HP15_2386at 2516.402 kb on + strand, within HP15_2386at 2516.402 kb on + strand, within HP15_2386at 2516.410 kb on - strand, within HP15_2386at 2516.460 kb on + strand, within HP15_2386at 2516.461 kb on + strand, within HP15_2386at 2516.493 kb on + strand, within HP15_2386at 2516.510 kb on - strand, within HP15_2386at 2516.605 kb on + strand, within HP15_2386at 2516.613 kb on - strand, within HP15_2386at 2516.619 kb on + strand, within HP15_2386at 2516.736 kb on - strand, within HP15_2386at 2516.761 kb on + strand, within HP15_2386at 2516.793 kb on - strand, within HP15_2386at 2516.839 kb on - strand, within HP15_2386at 2516.891 kb on + strand, within HP15_2386at 2517.067 kb on + strand, within HP15_2386at 2517.081 kb on + strand, within HP15_2386at 2517.082 kb on - strand, within HP15_2386at 2517.157 kb on + strandat 2518.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,516,402 + HP15_2386 0.16 -0.2
2,516,402 + HP15_2386 0.16 +0.3
2,516,402 + HP15_2386 0.16 +1.1
2,516,410 - HP15_2386 0.17 -3.2
2,516,460 + HP15_2386 0.22 -0.3
2,516,461 + HP15_2386 0.22 -2.2
2,516,493 + HP15_2386 0.25 -1.3
2,516,510 - HP15_2386 0.27 -0.5
2,516,605 + HP15_2386 0.37 -1.0
2,516,613 - HP15_2386 0.38 +0.9
2,516,619 + HP15_2386 0.38 -1.3
2,516,736 - HP15_2386 0.51 -3.2
2,516,761 + HP15_2386 0.53 -1.1
2,516,793 - HP15_2386 0.57 -1.3
2,516,839 - HP15_2386 0.61 +0.8
2,516,891 + HP15_2386 0.67 +1.1
2,517,067 + HP15_2386 0.85 -0.0
2,517,081 + HP15_2386 0.87 -2.0
2,517,082 - HP15_2386 0.87 +0.5
2,517,157 + +0.6
2,518,968 - -2.3

Or see this region's nucleotide sequence