Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2333 and HP15_2334 are separated by 51 nucleotides HP15_2334 and HP15_2335 are separated by 4 nucleotides HP15_2335 and HP15_2336 are separated by 42 nucleotides HP15_2336 and HP15_2337 are separated by 242 nucleotides
HP15_2333: HP15_2333 - conserved hypothetical protein, at 2,453,621 to 2,454,133
_2333
HP15_2334: HP15_2334 - conserved hypothetical protein, at 2,454,185 to 2,454,445
_2334
HP15_2335: HP15_2335 - SOS cell division inhibitor, at 2,454,450 to 2,454,941
_2335
HP15_2336: HP15_2336 - LexA repressor, at 2,454,984 to 2,455,592
_2336
HP15_2337: HP15_2337 - conserved hypothetical protein, at 2,455,835 to 2,456,812
_2337
Position (kb)
2454
2455
2456 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2454.248 kb on + strand, within HP15_2334 at 2454.432 kb on - strand at 2454.434 kb on + strand at 2454.435 kb on - strand at 2454.448 kb on + strand at 2454.456 kb on - strand at 2454.575 kb on + strand, within HP15_2335 at 2454.591 kb on + strand, within HP15_2335 at 2454.594 kb on - strand, within HP15_2335 at 2454.596 kb on + strand, within HP15_2335 at 2454.606 kb on + strand, within HP15_2335 at 2454.609 kb on - strand, within HP15_2335 at 2454.613 kb on + strand, within HP15_2335 at 2454.614 kb on - strand, within HP15_2335 at 2454.883 kb on + strand, within HP15_2335 at 2454.886 kb on - strand, within HP15_2335 at 2454.888 kb on + strand, within HP15_2335 at 2454.888 kb on + strand, within HP15_2335 at 2454.895 kb on + strand at 2454.896 kb on - strand at 2454.896 kb on - strand at 2454.963 kb on + strand at 2454.963 kb on + strand at 2454.982 kb on + strand at 2454.987 kb on + strand at 2454.995 kb on - strand at 2455.000 kb on - strand at 2455.000 kb on - strand at 2455.060 kb on - strand, within HP15_2336 at 2455.129 kb on + strand, within HP15_2336 at 2455.166 kb on + strand, within HP15_2336 at 2455.184 kb on + strand, within HP15_2336 at 2455.368 kb on + strand, within HP15_2336 at 2455.631 kb on + strand at 2455.639 kb on - strand at 2455.699 kb on + strand at 2455.707 kb on - strand at 2455.707 kb on - strand at 2455.770 kb on + strand at 2455.814 kb on + strand at 2455.814 kb on + strand at 2455.822 kb on - strand at 2455.904 kb on - strand at 2455.906 kb on + strand at 2455.994 kb on + strand, within HP15_2337 at 2456.013 kb on - strand, within HP15_2337 at 2456.103 kb on - strand, within HP15_2337 at 2456.164 kb on - strand, within HP15_2337 at 2456.180 kb on - strand, within HP15_2337 at 2456.206 kb on + strand, within HP15_2337 at 2456.332 kb on + strand, within HP15_2337 at 2456.510 kb on - strand, within HP15_2337 at 2456.591 kb on - strand, within HP15_2337
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 2,454,248 + HP15_2334 0.24 -1.3 2,454,432 - -0.1 2,454,434 + -0.2 2,454,435 - +0.1 2,454,448 + +2.9 2,454,456 - -0.2 2,454,575 + HP15_2335 0.25 -0.4 2,454,591 + HP15_2335 0.29 -0.7 2,454,594 - HP15_2335 0.29 -0.0 2,454,596 + HP15_2335 0.30 +0.2 2,454,606 + HP15_2335 0.32 +0.7 2,454,609 - HP15_2335 0.32 +1.4 2,454,613 + HP15_2335 0.33 +0.5 2,454,614 - HP15_2335 0.33 +0.7 2,454,883 + HP15_2335 0.88 -0.1 2,454,886 - HP15_2335 0.89 -1.2 2,454,888 + HP15_2335 0.89 +1.8 2,454,888 + HP15_2335 0.89 -0.4 2,454,895 + -0.2 2,454,896 - +0.2 2,454,896 - -0.4 2,454,963 + -1.6 2,454,963 + -0.1 2,454,982 + -0.2 2,454,987 + +1.5 2,454,995 - -0.1 2,455,000 - -0.3 2,455,000 - -1.1 2,455,060 - HP15_2336 0.12 +1.1 2,455,129 + HP15_2336 0.24 +3.1 2,455,166 + HP15_2336 0.30 +0.0 2,455,184 + HP15_2336 0.33 +2.1 2,455,368 + HP15_2336 0.63 +1.5 2,455,631 + -0.6 2,455,639 - -0.3 2,455,699 + -0.1 2,455,707 - -1.9 2,455,707 - +0.6 2,455,770 + +0.9 2,455,814 + -0.3 2,455,814 + -0.6 2,455,822 - +0.1 2,455,904 - +0.2 2,455,906 + -0.3 2,455,994 + HP15_2337 0.16 +0.3 2,456,013 - HP15_2337 0.18 -0.3 2,456,103 - HP15_2337 0.27 +0.1 2,456,164 - HP15_2337 0.34 -0.0 2,456,180 - HP15_2337 0.35 -2.0 2,456,206 + HP15_2337 0.38 -1.5 2,456,332 + HP15_2337 0.51 -0.7 2,456,510 - HP15_2337 0.69 +0.9 2,456,591 - HP15_2337 0.77 -0.8
Or see this region's nucleotide sequence