Strain Fitness in Marinobacter adhaerens HP15 around HP15_2336

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2333 and HP15_2334 are separated by 51 nucleotidesHP15_2334 and HP15_2335 are separated by 4 nucleotidesHP15_2335 and HP15_2336 are separated by 42 nucleotidesHP15_2336 and HP15_2337 are separated by 242 nucleotides HP15_2333: HP15_2333 - conserved hypothetical protein, at 2,453,621 to 2,454,133 _2333 HP15_2334: HP15_2334 - conserved hypothetical protein, at 2,454,185 to 2,454,445 _2334 HP15_2335: HP15_2335 - SOS cell division inhibitor, at 2,454,450 to 2,454,941 _2335 HP15_2336: HP15_2336 - LexA repressor, at 2,454,984 to 2,455,592 _2336 HP15_2337: HP15_2337 - conserved hypothetical protein, at 2,455,835 to 2,456,812 _2337 Position (kb) 2454 2455 2456Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2454.248 kb on + strand, within HP15_2334at 2454.432 kb on - strandat 2454.434 kb on + strandat 2454.435 kb on - strandat 2454.448 kb on + strandat 2454.456 kb on - strandat 2454.575 kb on + strand, within HP15_2335at 2454.591 kb on + strand, within HP15_2335at 2454.594 kb on - strand, within HP15_2335at 2454.596 kb on + strand, within HP15_2335at 2454.606 kb on + strand, within HP15_2335at 2454.609 kb on - strand, within HP15_2335at 2454.613 kb on + strand, within HP15_2335at 2454.614 kb on - strand, within HP15_2335at 2454.883 kb on + strand, within HP15_2335at 2454.886 kb on - strand, within HP15_2335at 2454.888 kb on + strand, within HP15_2335at 2454.888 kb on + strand, within HP15_2335at 2454.895 kb on + strandat 2454.896 kb on - strandat 2454.896 kb on - strandat 2454.963 kb on + strandat 2454.963 kb on + strandat 2454.982 kb on + strandat 2454.987 kb on + strandat 2454.995 kb on - strandat 2455.000 kb on - strandat 2455.000 kb on - strandat 2455.060 kb on - strand, within HP15_2336at 2455.129 kb on + strand, within HP15_2336at 2455.166 kb on + strand, within HP15_2336at 2455.184 kb on + strand, within HP15_2336at 2455.368 kb on + strand, within HP15_2336at 2455.631 kb on + strandat 2455.639 kb on - strandat 2455.699 kb on + strandat 2455.707 kb on - strandat 2455.707 kb on - strandat 2455.770 kb on + strandat 2455.814 kb on + strandat 2455.814 kb on + strandat 2455.822 kb on - strandat 2455.904 kb on - strandat 2455.906 kb on + strandat 2455.994 kb on + strand, within HP15_2337at 2456.013 kb on - strand, within HP15_2337at 2456.103 kb on - strand, within HP15_2337at 2456.164 kb on - strand, within HP15_2337at 2456.180 kb on - strand, within HP15_2337at 2456.206 kb on + strand, within HP15_2337at 2456.332 kb on + strand, within HP15_2337at 2456.510 kb on - strand, within HP15_2337at 2456.591 kb on - strand, within HP15_2337

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,454,248 + HP15_2334 0.24 -1.3
2,454,432 - -0.1
2,454,434 + -0.2
2,454,435 - +0.1
2,454,448 + +2.9
2,454,456 - -0.2
2,454,575 + HP15_2335 0.25 -0.4
2,454,591 + HP15_2335 0.29 -0.7
2,454,594 - HP15_2335 0.29 -0.0
2,454,596 + HP15_2335 0.30 +0.2
2,454,606 + HP15_2335 0.32 +0.7
2,454,609 - HP15_2335 0.32 +1.4
2,454,613 + HP15_2335 0.33 +0.5
2,454,614 - HP15_2335 0.33 +0.7
2,454,883 + HP15_2335 0.88 -0.1
2,454,886 - HP15_2335 0.89 -1.2
2,454,888 + HP15_2335 0.89 +1.8
2,454,888 + HP15_2335 0.89 -0.4
2,454,895 + -0.2
2,454,896 - +0.2
2,454,896 - -0.4
2,454,963 + -1.6
2,454,963 + -0.1
2,454,982 + -0.2
2,454,987 + +1.5
2,454,995 - -0.1
2,455,000 - -0.3
2,455,000 - -1.1
2,455,060 - HP15_2336 0.12 +1.1
2,455,129 + HP15_2336 0.24 +3.1
2,455,166 + HP15_2336 0.30 +0.0
2,455,184 + HP15_2336 0.33 +2.1
2,455,368 + HP15_2336 0.63 +1.5
2,455,631 + -0.6
2,455,639 - -0.3
2,455,699 + -0.1
2,455,707 - -1.9
2,455,707 - +0.6
2,455,770 + +0.9
2,455,814 + -0.3
2,455,814 + -0.6
2,455,822 - +0.1
2,455,904 - +0.2
2,455,906 + -0.3
2,455,994 + HP15_2337 0.16 +0.3
2,456,013 - HP15_2337 0.18 -0.3
2,456,103 - HP15_2337 0.27 +0.1
2,456,164 - HP15_2337 0.34 -0.0
2,456,180 - HP15_2337 0.35 -2.0
2,456,206 + HP15_2337 0.38 -1.5
2,456,332 + HP15_2337 0.51 -0.7
2,456,510 - HP15_2337 0.69 +0.9
2,456,591 - HP15_2337 0.77 -0.8

Or see this region's nucleotide sequence