Strain Fitness in Marinobacter adhaerens HP15 around HP15_2253

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2252 and HP15_2253 are separated by 4 nucleotidesHP15_2253 and HP15_2254 are separated by 5 nucleotidesHP15_2254 and HP15_2255 are separated by 130 nucleotides HP15_2252: HP15_2252 - Na(+)-translocating NADH-quinone reductase subunit B, at 2,371,906 to 2,373,114 _2252 HP15_2253: HP15_2253 - Na(+)-translocating NADH-quinone reductase subunit A, at 2,373,119 to 2,374,465 _2253 HP15_2254: HP15_2254 - hypothetical protein, at 2,374,471 to 2,374,605 _2254 HP15_2255: HP15_2255 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,374,736 to 2,376,205 _2255 Position (kb) 2373 2374 2375Strain fitness (log2 ratio) -1 0 1at 2374.672 kb on + strandat 2374.714 kb on - strandat 2374.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,374,672 + -0.5
2,374,714 - -0.9
2,374,734 + +1.3

Or see this region's nucleotide sequence