Strain Fitness in Marinobacter adhaerens HP15 around HP15_2244

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2243 and HP15_2244 overlap by 4 nucleotidesHP15_2244 and HP15_2245 are separated by 58 nucleotides HP15_2243: HP15_2243 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,363,811 to 2,364,938 _2243 HP15_2244: HP15_2244 - glycerophosphoryl diester phosphodiesterase, at 2,364,935 to 2,365,741 _2244 HP15_2245: HP15_2245 - soluble pyridine nucleotide transhydrogenase, at 2,365,800 to 2,367,191 _2245 Position (kb) 2364 2365 2366Strain fitness (log2 ratio) -2 -1 0 1 2at 2364.094 kb on - strand, within HP15_2243at 2364.137 kb on + strand, within HP15_2243at 2364.239 kb on + strand, within HP15_2243at 2364.469 kb on + strand, within HP15_2243at 2364.667 kb on + strand, within HP15_2243at 2364.736 kb on + strand, within HP15_2243at 2364.819 kb on + strand, within HP15_2243at 2364.871 kb on - strandat 2365.025 kb on - strand, within HP15_2244at 2365.081 kb on - strand, within HP15_2244at 2365.126 kb on + strand, within HP15_2244at 2365.126 kb on + strand, within HP15_2244at 2365.667 kb on - strandat 2365.760 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,364,094 - HP15_2243 0.25 +0.6
2,364,137 + HP15_2243 0.29 -0.9
2,364,239 + HP15_2243 0.38 -0.5
2,364,469 + HP15_2243 0.58 +0.3
2,364,667 + HP15_2243 0.76 +0.5
2,364,736 + HP15_2243 0.82 +0.7
2,364,819 + HP15_2243 0.89 +0.3
2,364,871 - -0.5
2,365,025 - HP15_2244 0.11 +1.4
2,365,081 - HP15_2244 0.18 -0.5
2,365,126 + HP15_2244 0.24 +2.6
2,365,126 + HP15_2244 0.24 +0.0
2,365,667 - -0.1
2,365,760 + -1.8

Or see this region's nucleotide sequence