Strain Fitness in Marinobacter adhaerens HP15 around HP15_2191

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2189 and HP15_2191 overlap by 4 nucleotidesHP15_2191 and HP15_2190 are separated by 138 nucleotidesHP15_2190 and HP15_2192 overlap by 4 nucleotides HP15_2189: HP15_2189 - cysteinyl-tRNA synthetase, at 2,305,699 to 2,307,087 _2189 HP15_2191: HP15_2191 - glutaminyl-tRNA synthetase, at 2,307,084 to 2,308,763 _2191 HP15_2190: HP15_2190 - peptidyl-prolyl cis-trans isomerase B, at 2,308,902 to 2,309,402 _2190 HP15_2192: HP15_2192 - UDP-2,3-diacylglucosamine hydrolase, at 2,309,399 to 2,310,124 _2192 Position (kb) 2307 2308 2309Strain fitness (log2 ratio) -1 0 1at 2309.072 kb on + strand, within HP15_2190at 2309.220 kb on + strand, within HP15_2190at 2309.296 kb on + strand, within HP15_2190

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,309,072 + HP15_2190 0.34 -1.1
2,309,220 + HP15_2190 0.63 +0.2
2,309,296 + HP15_2190 0.79 -0.2

Or see this region's nucleotide sequence