Strain Fitness in Marinobacter adhaerens HP15 around HP15_2187

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2186 and HP15_tRNA38 are separated by 222 nucleotidesHP15_tRNA38 and HP15_tRNA39 are separated by 79 nucleotidesHP15_tRNA39 and HP15_tRNA40 are separated by 75 nucleotidesHP15_tRNA40 and HP15_tRNA41 are separated by 33 nucleotidesHP15_tRNA41 and HP15_2187 are separated by 189 nucleotidesHP15_2187 and HP15_2188 are separated by 83 nucleotides HP15_2186: HP15_2186 - trigger factor, at 2,300,164 to 2,301,468 _2186 HP15_tRNA38: HP15_tRNA38 - tRNA-Leu, at 2,301,691 to 2,301,775 _tRNA38 HP15_tRNA39: HP15_tRNA39 - tRNA-His, at 2,301,855 to 2,301,930 _tRNA39 HP15_tRNA40: HP15_tRNA40 - tRNA-Arg, at 2,302,006 to 2,302,082 _tRNA40 HP15_tRNA41: HP15_tRNA41 - tRNA-Pro, at 2,302,116 to 2,302,192 _tRNA41 HP15_2187: HP15_2187 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 2,302,382 to 2,303,284 _2187 HP15_2188: HP15_2188 - malate synthase G, at 2,303,368 to 2,305,548 _2188 Position (kb) 2302 2303 2304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2301.605 kb on - strandat 2301.630 kb on + strandat 2301.695 kb on - strandat 2302.322 kb on + strandat 2302.330 kb on - strandat 2302.337 kb on + strandat 2302.345 kb on - strandat 2303.305 kb on - strandat 2303.664 kb on + strand, within HP15_2188

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,301,605 - -0.5
2,301,630 + -0.5
2,301,695 - +1.0
2,302,322 + +0.1
2,302,330 - +0.4
2,302,337 + -0.5
2,302,345 - +1.5
2,303,305 - -0.9
2,303,664 + HP15_2188 0.14 -4.0

Or see this region's nucleotide sequence