Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2186 and HP15_tRNA38 are separated by 222 nucleotides HP15_tRNA38 and HP15_tRNA39 are separated by 79 nucleotides HP15_tRNA39 and HP15_tRNA40 are separated by 75 nucleotides HP15_tRNA40 and HP15_tRNA41 are separated by 33 nucleotides HP15_tRNA41 and HP15_2187 are separated by 189 nucleotides HP15_2187 and HP15_2188 are separated by 83 nucleotides
HP15_2186: HP15_2186 - trigger factor, at 2,300,164 to 2,301,468
_2186
HP15_tRNA38: HP15_tRNA38 - tRNA-Leu, at 2,301,691 to 2,301,775
_tRNA38
HP15_tRNA39: HP15_tRNA39 - tRNA-His, at 2,301,855 to 2,301,930
_tRNA39
HP15_tRNA40: HP15_tRNA40 - tRNA-Arg, at 2,302,006 to 2,302,082
_tRNA40
HP15_tRNA41: HP15_tRNA41 - tRNA-Pro, at 2,302,116 to 2,302,192
_tRNA41
HP15_2187: HP15_2187 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 2,302,382 to 2,303,284
_2187
HP15_2188: HP15_2188 - malate synthase G, at 2,303,368 to 2,305,548
_2188
Position (kb)
2302
2303
2304 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2301.605 kb on - strand at 2301.630 kb on + strand at 2301.695 kb on - strand at 2302.322 kb on + strand at 2302.330 kb on - strand at 2302.337 kb on + strand at 2302.345 kb on - strand at 2303.305 kb on - strand at 2303.664 kb on + strand, within HP15_2188
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 2,301,605 - -0.5 2,301,630 + -0.5 2,301,695 - +1.0 2,302,322 + +0.1 2,302,330 - +0.4 2,302,337 + -0.5 2,302,345 - +1.5 2,303,305 - -0.9 2,303,664 + HP15_2188 0.14 -4.0
Or see this region's nucleotide sequence