Strain Fitness in Marinobacter adhaerens HP15 around HP15_2060

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2059 and HP15_2060 overlap by 4 nucleotidesHP15_2060 and HP15_2061 overlap by 8 nucleotidesHP15_2061 and HP15_2062 are separated by 26 nucleotides HP15_2059: HP15_2059 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,160,507 to 2,161,553 _2059 HP15_2060: HP15_2060 - protein-tyrosine phosphatase, low molecular weight, at 2,161,550 to 2,162,029 _2060 HP15_2061: HP15_2061 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 2,162,022 to 2,162,816 _2061 HP15_2062: HP15_2062 - YcaR-like protein, at 2,162,843 to 2,163,031 _2062 Position (kb) 2161 2162 2163Strain fitness (log2 ratio) -1 0 1 2 3at 2161.556 kb on - strandat 2162.053 kb on - strandat 2162.871 kb on - strand, within HP15_2062at 2162.961 kb on - strand, within HP15_2062at 2162.993 kb on - strand, within HP15_2062at 2162.993 kb on - strand, within HP15_2062at 2162.993 kb on - strand, within HP15_2062

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,161,556 - +3.1
2,162,053 - -0.5
2,162,871 - HP15_2062 0.15 +0.0
2,162,961 - HP15_2062 0.62 +1.2
2,162,993 - HP15_2062 0.79 +0.9
2,162,993 - HP15_2062 0.79 +0.4
2,162,993 - HP15_2062 0.79 +0.1

Or see this region's nucleotide sequence