Strain Fitness in Marinobacter adhaerens HP15 around HP15_2058

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2056 and HP15_2057 are separated by 1 nucleotidesHP15_2057 and HP15_2058 are separated by 85 nucleotidesHP15_2058 and HP15_2059 are separated by 55 nucleotides HP15_2056: HP15_2056 - transcriptional regulator of AsnC/Lrp family protein, at 2,157,477 to 2,157,974 _2056 HP15_2057: HP15_2057 - transcriptional regulator, TetR family, at 2,157,976 to 2,158,632 _2057 HP15_2058: HP15_2058 - prolyl-tRNA synthetase, at 2,158,718 to 2,160,451 _2058 HP15_2059: HP15_2059 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,160,507 to 2,161,553 _2059 Position (kb) 2158 2159 2160 2161Strain fitness (log2 ratio) -1 0 1 2at 2157.772 kb on + strand, within HP15_2056at 2157.780 kb on + strand, within HP15_2056at 2157.788 kb on - strand, within HP15_2056at 2157.788 kb on - strand, within HP15_2056at 2157.946 kb on - strandat 2157.951 kb on - strandat 2157.951 kb on - strandat 2158.013 kb on + strandat 2158.013 kb on + strandat 2158.013 kb on + strandat 2158.189 kb on - strand, within HP15_2057at 2158.232 kb on - strand, within HP15_2057at 2158.322 kb on - strand, within HP15_2057at 2158.379 kb on + strand, within HP15_2057at 2158.509 kb on + strand, within HP15_2057at 2158.540 kb on + strand, within HP15_2057at 2158.548 kb on - strand, within HP15_2057at 2158.599 kb on - strandat 2160.491 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,157,772 + HP15_2056 0.59 -0.5
2,157,780 + HP15_2056 0.61 -0.8
2,157,788 - HP15_2056 0.62 -0.1
2,157,788 - HP15_2056 0.62 -0.9
2,157,946 - +1.2
2,157,951 - -1.0
2,157,951 - +0.3
2,158,013 + +0.5
2,158,013 + +0.6
2,158,013 + -0.3
2,158,189 - HP15_2057 0.32 +0.9
2,158,232 - HP15_2057 0.39 +0.8
2,158,322 - HP15_2057 0.53 +2.5
2,158,379 + HP15_2057 0.61 -0.4
2,158,509 + HP15_2057 0.81 -0.1
2,158,540 + HP15_2057 0.86 +0.5
2,158,548 - HP15_2057 0.87 -0.4
2,158,599 - +1.1
2,160,491 + +0.2

Or see this region's nucleotide sequence